Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0689 ATGAATGGGGTCTCACAGTTAGAACTAGATGGCTCTGATTTTGTTGAAGTTGATCCAACTGGCAGATATGGAAGATACAATGAAATACTTGGCAAAGGAGCTTCAAAGACGGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTGTATGATTTCCTACAAAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCTTGAAAACTTTGAAGCATAGGAACATTATGAAATTTTATACATCTTGGGTTGATACTGCTAATAGAAATATTAATTTCGTTACTGAAATGTTTACTTCTGGTACTCTTAGACAGTATAGGCTAAAGCACAAGAGAGTTCACATCAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAATGGACTTCTTTATCTTCATAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCAAGGGGAAGTGAAGATTGGCGATCTTGGCCTGGCTGCAATCCTCCGGAAATCCCATGCCGCTCATTGTGTAGGAACCCCTGAGTTTATGGCCCCAGAAGTATATGAAGAGGCATATAATGAATTAGTTGATATATATTCTTTTGGTATGTGCTTATTAGAGATGGTCACATTTGAATTTCCTTATAGTGAATGCACTCATCCAGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCAACAGTTTCTCTTAGGCTCTCTGCAAAGGAGCTTCTAGATGATCCATTTCTTCGAGATGATGATTACGAGAATGATTTAAGAACCATAAACAGTGGGGGATTGGATGACCTTGTTCCTCATATCAAGCAGCCGTTGTTTGATCTTCATCGAAGCTATAGTAACTTTAGTAATGAATACTCAAATGGTTTTGGGTATGAAGGAGACTGGAGTTCTCATCCAGTTGAGATCGAACCTAGTGGAATTGAACTTTTTGAGTACCATGATGATGAAACCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGACGACGATAGCATCTTTTTGAGACTAAGAATTACTGATAAAGAAGGTCAAATTCGAAATATTTATTTTCCATTTGACATAGAGATGGATACAGCAATAAGTGTGGCAACTGAAATGGTAGCAGAACTTGACATTACCGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGGATGGAGGCCAGGACCAGGATTTGATGAAAGTCCCCATTTAGCCAACCAAGGATTTTGTCAAAATTGTGTGTCTAATCATACTTCTAGTGGCTCTCTACTTGATTTTATTTCACATAATCCAGGTAGCAAGAACTTGCAACTTCTTAAGTGCTGTAAGCATGGATGTGCTTCAACGCATGGGCGATTCGAAGAGATCACATTCCAATCTGAGGAGTATGACAATCATGTTAGAGAAGATGTACTTGACATATTAAGCCAAACAAATGGCTTGCAGTATCCGGGGTTATGGAATCAGCATGAAAGTCGTGAACTGAGTCCGGTGGAGTCTGATCAAAGCCATTCTGATGAACCATATGAACAGTTAGACAAATCAGTATCAGCTGAAGACAAAGAACTAGATGCTTTGGAAAACAACTTTGCACCCAAGGCAGGAAATCCTCTAAGGAATTTATCAGGAACCCTTGATTTATCGACTTTCCGCTCATTCTACTGTGACCTTGAGAATGGCTATGAGAAAGAGATCCAAAAGGAAATGAGGTGGCTCAGAGCAAAATACCAGATGGAGTTAAGAGAAATTAAGGATCAACAGTTTGAACTAACAGCTAATCACAAAACCGAATGCAGCCTTATGTCAACTTCACCAACAGAAATGTTAAACAGAGGCAACAATGGGATTGACTTTAAGAAACCCTTAATCGATTACTTGAACTGTGATTTCAGAAGCCATCATCATGTCCATAAGAGCAGCCCCAATTCGGACACCCGAAGGGACCAAAATTGTGAGGCGACGGGATCCCTTGGAGAAGAAGGTATGGTTACTGCAATGAGTTTTTACACAGGCTCATTGCTTCCCCACTCACTGCATAGGACAGTTTCCCTCCCAGTTGATGCTGTTGATGTATAA 2208 0.3995 MNGVSQLELDGSDFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVHIRAVKHWCRQILNGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCLLEMVTFEFPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSAKELLDDPFLRDDDYENDLRTINSGGLDDLVPHIKQPLFDLHRSYSNFSNEYSNGFGYEGDWSSHPVEIEPSGIELFEYHDDETSEDVDISIKGKRKDDDSIFLRLRITDKEGQIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPGWRPGPGFDESPHLANQGFCQNCVSNHTSSGSLLDFISHNPGSKNLQLLKCCKHGCASTHGRFEEITFQSEEYDNHVREDVLDILSQTNGLQYPGLWNQHESRELSPVESDQSHSDEPYEQLDKSVSAEDKELDALENNFAPKAGNPLRNLSGTLDLSTFRSFYCDLENGYEKEIQKEMRWLRAKYQMELREIKDQQFELTANHKTECSLMSTSPTEMLNRGNNGIDFKKPLIDYLNCDFRSHHHVHKSSPNSDTRRDQNCEATGSLGEEGMVTAMSFYTGSLLPHSLHRTVSLPVDAVDV 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0689 735 Coils Coil 553 573 - -
Lal13g0689 735 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0689 735 CDD STKc_WNK 22 281 - -
Lal13g0689 735 MobiDBLite consensus disorder prediction 538 560 - -
Lal13g0689 735 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Lal13g0689 735 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Lal13g0689 735 Gene3D - 371 433 - -
Lal13g0689 735 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0689 735 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Lal13g0689 735 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 725 - -
Lal13g0689 735 MobiDBLite consensus disorder prediction 536 560 - -
Lal13g0689 735 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0689 735 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Lal13g0689 735 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 725 - -
Lal13g0689 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0689 Lal-Chr13 4463459 4467097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0689 1 537 MAP Kinase Kinase Kinase AT3G22420 56.153 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal13g0689 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0689 K08867 - gmx:100775959 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0689 13 4463459 4467097 Lal13g0689 13 4463459 4467097 ECH
Lal12g0617 12 4477871 4481295 Lal13g0689 13 4463459 4467097 LSH
Lal5g0095 5 901125 904419 Lal13g0689 13 4463459 4467097 PCT
Lal13g0689 13 4463459 4467097 Lal5g0095 5 901125 904419 PCT