Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0681 ATGACTGAGAGAGGAGGGAAAAGAGAAAGGATGAAGAACATTTTCAAGAAGCTTCACATTGGAAGTAACAATAACAACAACGATCCTCATCGATCCAATGAAACCGCGCCACCTGTCCCGTCGCCTTTGTTCTCCGCCGATAACCGAACTGTTCGGAACACCACACCGTCTCCGGCTACGGCTAGTCCTTCTTCATCGCCGTCCACGGCGGCGTCTGTTCCATCTGCTGCCGCAACAACCCCGGCGATGAATCGGCAGGATTTTATATCGTCGGAGGAGGAGTTTCAGATGCAGCTAGCCCTAGCTATCAGCGCTTCCAATTCTGAGTTCCGTGACGATCCTGAAAAGGATCAGATCCACGCGGCGACGTTGCTGAGCTTGGGAGGACGTCAAATCGATTCCGCCAGGAACAAGGATGACGTGGCGGAAGCGCTGTCTAGGCACTACTGGGAATACAATGTGCTTGACTATGAAGAGAAAGTAATAAATGGTTTTTATGATGTATATGGGCTCAATACGGATTCTTCAATGCTAGGAAAGATACCTTCTCTAGCAGATCTTGAAGCAGACCCTGGAAGTTCTACCTTTGAAGTGGTCATAGTTAATCAAACAATTGATCCTGCTCTGGAAGAGATAGTGCAAATTGCTCAGTGTATTGCATTAGACTGCCCTGTCACTGAGGTTGGTATTTTGGTGCAAAGGCTTGCTGAACTTGTTACAAGCCATATGGGTGGTCCTGTAAAGGACGCTAATATTATATTGGCACGATGGACAGAAAGAAGTACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTCTAGGGTCCTTAAATATTGGGCTCTCTAGACACCGTGCTTTGCTTTTCAAGGTATTGGCTGACAACATTAAGATGCCTTGTAGATTGGTAAAAGGTAGCCATTACACTGGTGTTGAGGATGATGCTGTCAATATTATAAAGGTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCTGGAACGCTTATCCCAGTTGATATTTCAAGTACGAAGGATAGTGCCTGTAAATCTTACAATCCGAAGATTTTGCCAAGTTTACCTTCCACTAAGGAAACTGAATTTTCTTACTCAAGACCTATCCCATCTCTCGGTGAAGGTAGTAGTCAGAATCCTGTAATAAATGGTCATCCACAATCCTGGAATGGAAAATCATATTTTGAGAAGCCAGATTACATGCCTTTTAACATAGATTTGAGCAGAGACACTGGCATTGGTCCTTCTAAGATCCCTAATGAAGGGACTCCTAACAAAGTCGAAGATTTGTCACCCTCGTCTTGTATTCCTCTGTACAAAGGGAGTCTTGGAATGAATGCAGTTGGAGACGGGACAAGATTGAATGTCAATGTTGTACCATATGCTCAGGACAGCCTCAATGACTCTCAGAGCCTCTTTGCAGATCTCAACCCATTCCAGATAAAGGGAACTGGGAAGATCTCCGTGCATAACAAACATGCGAAAAATAAAGCTCCTGAACTTCAGAATACAAGAAACAATACTGTTTCTGGCCGACCTCTGTGGAAGAATCAATATGCTTACAATGAATTCCCTAGGAAAACTAATCACAATCCTAATGAATATAATCCTTCTTTATTGGTTTCCAATAGTTCTTCCGTTTATGAGAACATTGATCTTGGTAGTTCCAAAGCATCATATAATTCACATGTAAATAATGGCATAAATGCTCGAACTTTGGCAGAAGTTACTAGTTCAGAGTCACCATCTGCTGCAACTGAACTGAGGCAGATCGATGATCCCAATGCTAATTATAATATGGAGGATTTGCGGAATTCTCAAAATGGTATGGTAGAAGTGGCTAAAGAACATGAAAACATTGAAATCAGACATCAAGAGCAGAGGAAGCGCACACATGACAGATTCATGAGTAGCAATTTGAAATTAAAGGATCCGGAGATAGAGAGTCCTAGCTCGTTGATTGATTCCATTTCAAACAGGATTGATTTGGATGACGTAGATGTTGGTAAATGTGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGAGAGGTGTACCATGCTGACTGGAATGGCACTGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGATTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATTATTTCGGAGTTTATTCCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCAAATTGTCAGATCGATGAGAAACGAAGGATAAAAATGGCTCTGGATGTGGCAAGGGGCATGAATTGCTTACACACCAGCAATCCTACGATTGTTCACCGAGATCTGAAATCCCCAAATCTTTTGGTTGATAAGAACTGGAACGTTAAGGTATGTGATTTTGGGTTGTCACGCCTGAAGCACAACACATTTTTATCATCCAAGTCCACTGCTGGAACGCCCGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAGTGTGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTGGCCACTCTAAGGTTGCCATGGACTGGAATGAATCCTATGCAAGTTGTTGGGGCAGTAGGTTTCCAAAACCGTCGACTTGATATTCCCAAGGAAGTTGATCCTTTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATCTGCGCCCCTCATTTGCACAGCTTACAGTGGCATTAAAGCCCCTGCAGTGTTTAGTTATTCCATCTAGTCAAGACCAGATAGCTTCACCTCTGCCACAGGAGATATATGTAAATTCCACCCCCTGA 2904 0.4329 MTERGGKRERMKNIFKKLHIGSNNNNNDPHRSNETAPPVPSPLFSADNRTVRNTTPSPATASPSSSPSTAASVPSAAATTPAMNRQDFISSEEEFQMQLALAISASNSEFRDDPEKDQIHAATLLSLGGRQIDSARNKDDVAEALSRHYWEYNVLDYEEKVINGFYDVYGLNTDSSMLGKIPSLADLEADPGSSTFEVVIVNQTIDPALEEIVQIAQCIALDCPVTEVGILVQRLAELVTSHMGGPVKDANIILARWTERSTELRTSLHTSVLPLGSLNIGLSRHRALLFKVLADNIKMPCRLVKGSHYTGVEDDAVNIIKVEDEREFLVDLMAAPGTLIPVDISSTKDSACKSYNPKILPSLPSTKETEFSYSRPIPSLGEGSSQNPVINGHPQSWNGKSYFEKPDYMPFNIDLSRDTGIGPSKIPNEGTPNKVEDLSPSSCIPLYKGSLGMNAVGDGTRLNVNVVPYAQDSLNDSQSLFADLNPFQIKGTGKISVHNKHAKNKAPELQNTRNNTVSGRPLWKNQYAYNEFPRKTNHNPNEYNPSLLVSNSSSVYENIDLGSSKASYNSHVNNGINARTLAEVTSSESPSAATELRQIDDPNANYNMEDLRNSQNGMVEVAKEHENIEIRHQEQRKRTHDRFMSSNLKLKDPEIESPSSLIDSISNRIDLDDVDVGKCEIPWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFIPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLDIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQCLVIPSSQDQIASPLPQEIYVNSTP 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0681 967 ProSiteProfiles Protein kinase domain profile. 686 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0681 967 SMART serkin_6 686 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0681 967 Gene3D Phosphorylase Kinase; domain 1 679 763 - -
Lal13g0681 967 MobiDBLite consensus disorder prediction 18 34 - -
Lal13g0681 967 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 79 959 - -
Lal13g0681 967 Gene3D Transferase(Phosphotransferase) domain 1 765 945 - -
Lal13g0681 967 CDD STKc_MAP3K-like 692 935 - -
Lal13g0681 967 PRINTS Tyrosine kinase catalytic domain signature 760 773 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 PRINTS Tyrosine kinase catalytic domain signature 799 817 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 PRINTS Tyrosine kinase catalytic domain signature 846 856 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 PRINTS Tyrosine kinase catalytic domain signature 865 887 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 PRINTS Tyrosine kinase catalytic domain signature 909 931 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 Pfam Protein tyrosine and serine/threonine kinase 687 936 IPR001245 GO:0004672|GO:0006468
Lal13g0681 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Lal13g0681 967 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524
Lal13g0681 967 PANTHER SERINE-THREONINE PROTEIN KINASE 79 959 - -
Lal13g0681 967 Pfam Ethylene-responsive protein kinase Le-CTR1 142 340 - -
Lal13g0681 967 MobiDBLite consensus disorder prediction 1 81 - -
Lal13g0681 967 MobiDBLite consensus disorder prediction 46 81 - -
Lal13g0681 967 SUPERFAMILY Protein kinase-like (PK-like) 675 956 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0681 Lal-Chr13 4402113 4418349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0681 11 922 MAP Kinase Kinase Kinase AT1G08720 54.671 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lal13g0681 PK_Tyr_Ser-Thr 4.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0681 - - aprc:113870732 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0681 13 4402113 4418349 Lal13g0681 13 4402113 4418349 ECH
Lal13g0681 13 4402113 4418349 Lal11g1105 11 14762787 14765605 PCT
Lal13g0681 13 4402113 4418349 Lal20g0042 20 304744 306900 PCT