Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0679 ATGGGGTGTGTGCTTGGCCGAGAAGTGTCATCGGGAATAATCTATAAGGTGAAGGAAAAGAAGAATTTGAGTGTTGAGTCAAACAGGAAGGTTGGTGAAGTCTCCACTAACAATGCTGTGGTGGAGATACAGAATGGTCAGAAAGAGAAGGAAGAGAAGGGTGGTGATGATGTGACTCAGACTCACCGGCCACAAGGTGAAAAAAGAAGAACATCAAAGCCAAACCCAAGGCTAAGTAATCCCCCAAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTTACGGCAGTATGTGGGGAAGCACTTAGTGGGTGGACTCCGCGGAAGGCTGACACATTTGAGAAAATTGATAAGATCGGTCAAGGGACATATAGTAATGTGTACCAAGCTAAAGATATGTTGACTGGTAAGATTGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTCTCCGAAGATTGAATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCATGAGTTTGTATCTGGTGTTTGAGTACATGGTGCATGATTTAGCTGGACTTTCTGCAAGTCCTGAAATCAAGTTCTCGGAGCCTCAGTGGCAATATTGGATGTCTCCAAATACAATGTATCTCCTACTACAGGTCAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAAGAGACATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTGATTAACGAGGAAGGGATACTTAAGGTTGCTGACTTTGGACTTGCATCTTTGTTTGATCCAGACCGCAGGCATCCTATGACCAATCGTGTAGTTACCCTTTGGTATCGGCCCCCTGAGTTGCTACTTGGTGCCACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTGGGAGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTTGAACAATTACATAAAATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCCAACGCTACTTTGTTTAAACCCCGAGAACCATATAAGAGATATATAAAAGAGACATTTAAAAGGTTTCCTCCTTCTGCACTATCCCTTATTGACACTCTTCTTGCTATTGATCCATCAGAACGGATGAGTGCCTCAGATGCCTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTGGTCTTCCAAAATATCCCCCAACTAAGGAAATGGATGCTAAACTACGGGATGATGAAGCGAGGAGATTAAGAGCTGCCAGCAAAGCTCATGGTGATGGTCCAAAGAAGCATCGTACACGTGATCGCGCTGTAAAAGCTAATCCAGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATTGATAGAAGGCGTCTAGTAACGCGTGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATGAAGATGGACAACTTGGCTTTCCTCTGGGATCTTCACAACATATTGATCCAGATATTGTTTCTAGTGTTGTTTCTTTGGGTTCAACCTCATATATATATTCAAGGGAACCATACCAAGCTTGGTCAGGTCCCATTGGTAATTCTGCTAGCAACAATGGTATGCCAAAGAGGAAGAAGAAACAAACTGCAGGTGATGCATTGGACTTTTCAAAACCACATAATAAAGGTTCCCTCAAGGATAAAGTTAATGGAAAGAAAATCATAGCTTAG 1794 0.4264 MGCVLGREVSSGIIYKVKEKKNLSVESNRKVGEVSTNNAVVEIQNGQKEKEEKGGDDVTQTHRPQGEKRRTSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWTPRKADTFEKIDKIGQGTYSNVYQAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHPNVIKLEGLVTSRMSMSLYLVFEYMVHDLAGLSASPEIKFSEPQWQYWMSPNTMYLLLQVKCYMHQLLSGLEHCHKRHVLHRDIKGSNLLINEEGILKVADFGLASLFDPDRRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRYIKETFKRFPPSALSLIDTLLAIDPSERMSASDALRSEFFTTEPYACDPSGLPKYPPTKEMDAKLRDDEARRLRAASKAHGDGPKKHRTRDRAVKANPAPEANAELQYNIDRRRLVTRANAKSKSEKFPPPHEDGQLGFPLGSSQHIDPDIVSSVVSLGSTSYIYSREPYQAWSGPIGNSASNNGMPKRKKKQTAGDALDFSKPHNKGSLKDKVNGKKIIA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0679 597 MobiDBLite consensus disorder prediction 45 74 - -
Lal13g0679 597 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Lal13g0679 597 CDD STKc_CDK9_like 117 416 - -
Lal13g0679 597 MobiDBLite consensus disorder prediction 450 480 - -
Lal13g0679 597 PANTHER CELL DIVISION PROTEIN KINASE 44 566 - -
Lal13g0679 597 MobiDBLite consensus disorder prediction 450 471 - -
Lal13g0679 597 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0679 597 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0679 597 Gene3D Transferase(Phosphotransferase) domain 1 219 455 - -
Lal13g0679 597 MobiDBLite consensus disorder prediction 551 565 - -
Lal13g0679 597 SUPERFAMILY Protein kinase-like (PK-like) 111 423 IPR011009 -
Lal13g0679 597 PANTHER OS01G0367700 PROTEIN 44 566 - -
Lal13g0679 597 MobiDBLite consensus disorder prediction 28 44 - -
Lal13g0679 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lal13g0679 597 MobiDBLite consensus disorder prediction 551 597 - -
Lal13g0679 597 MobiDBLite consensus disorder prediction 25 89 - -
Lal13g0679 597 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Lal13g0679 597 Pfam Protein kinase domain 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0679 597 MobiDBLite consensus disorder prediction 566 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0679 Lal-Chr13 4391949 4397571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0679 109 454 Core Cell Cycle Gene Families AT5G10270 49.171 1.73e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal13g0679 Pkinase 3.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0679 K08819 - gmx:100817289 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0610 12 4399296 4404294 Lal13g0679 13 4391949 4397571 ECH
Lal13g0679 13 4391949 4397571 Lal13g0679 13 4391949 4397571 ECH
Lal12g0610 12 4399296 4404294 Lal13g0679 13 4391949 4397571 LSH