Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0669 ATGGCGAGTGACGGTGACGCTACTCACGCATCTTATTGTTTATGGGTCAATAAGAAAAGCTCTGCGAATAAATCAAAGAAGTTCCTAACAGGCGATTCTTTTAATAGGAGAATAGGATCTCTGTTTTCTCGCTCTAATTCTGCCCAAGATTTGAGACAGTTTGACTTGGAGAAAGAGAAAGAAGATGAGTCATCTCCAAGGGGAGTCTTAGAATCATGCAATCGAGACTTTGACACCGAGCACCAACCACCTGAATCGGAGACCAGTTGTTCAAGGGCACAATCACATTGGGGAAAATTTCCCAATCTGTGGAAGAAAAGATCATTTAAGCGCCTGCCGTCATCCTTGCAAGCCTTGCCCCCTATTGGTGTGCCAAAGATGCTAAAGGGGAAAAGCAAAAGCACTAGAGAAAATCATACTCTAAATAATCTATACAACTTCAGGTCTTCGTTGGTGACTTTTAGCCTCTCTGAACTGAGAAATGCAACCAATAATTTTAGCAATGAAAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTTCAAGGGTTGTCTCCAAGATGGGCAACTAATAGCTGTGAAGAAACTGACTAAAGGGACTACAGAAGAAGTAATATCAGGCTTTCTAACTGAGCTTGGCGTTATCGCTCATGTTGACCATCCTAATATTGCCAAGCTTATTGGATGTGGTGTAGAAGGTGGAATGCACCTTGTATTTGAACTATCTACATTAGGAAGTCTAGGGACCCTTCTTCATGGTCCAGATAAAAACAAATTGGAGTGGAGTAAAAGATATAAAATTGCTCTAGGAATAGCTGATGGTCTCCTCTACCTGCATGAGAACTGTCACCGGCGAATCATTCACAGAGACATTAAGTCGGAGAATATTCTGCTCACTGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCTAAGTGGTTACCTGAAGATTGGACTCATCATAATGTATCAAAGTTTGAAGGAACATTCGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTAGATGAGAAAACAGATGTATATTCTTTTGGGGTCCTACTCTTGGAGATCATAACTGGGCATCCTGCTTTGGATCATATGCAGCAGAATGTTGTTATATGGGCAAAACCTTTGCTTGATGCTAATAATGTCAGGGAACTTGTTGATCCGTCTCTTGGCAATTACTATGACCGAGAACAGATAGATCATGTTGTGTTGACTGCATCACTGTGTGTCGAGCAGTCTCCTATCCTACGCCCTCTTATGAGTCAGGCAAGTACACAACAACCTGGAAAGTTGCACTTTCTTCTTAAACTAACATATTTTCATCTTCTTAACTGTGTTGTAACACTGCTAAGAGGTGATAAGTGTGTCATGGGATCTAAAAGAGCATCATACAAAAGGAGACCTTTCCTAAGAACATACTCAGAAGAGCTACTTGATGTGCAAGAGTACAACTCTACAAAATATCTGAGAGATCTCAATAGAATGAAGCAGGTTGCCTTGGGTCCTGAGAGCTAA 1530 0.4105 MASDGDATHASYCLWVNKKSSANKSKKFLTGDSFNRRIGSLFSRSNSAQDLRQFDLEKEKEDESSPRGVLESCNRDFDTEHQPPESETSCSRAQSHWGKFPNLWKKRSFKRLPSSLQALPPIGVPKMLKGKSKSTRENHTLNNLYNFRSSLVTFSLSELRNATNNFSNENIIGRGGFAEVFKGCLQDGQLIAVKKLTKGTTEEVISGFLTELGVIAHVDHPNIAKLIGCGVEGGMHLVFELSTLGSLGTLLHGPDKNKLEWSKRYKIALGIADGLLYLHENCHRRIIHRDIKSENILLTENFEPQICDFGLAKWLPEDWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGHPALDHMQQNVVIWAKPLLDANNVRELVDPSLGNYYDREQIDHVVLTASLCVEQSPILRPLMSQASTQQPGKLHFLLKLTYFHLLNCVVTLLRGDKCVMGSKRASYKRRPFLRTYSEELLDVQEYNSTKYLRDLNRMKQVALGPES 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0669 509 Gene3D Transferase(Phosphotransferase) domain 1 243 436 - -
Lal13g0669 509 SMART serkin_6 166 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0669 509 Pfam Protein tyrosine and serine/threonine kinase 169 376 IPR001245 GO:0004672|GO:0006468
Lal13g0669 509 ProSiteProfiles Protein kinase domain profile. 166 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0669 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lal13g0669 509 MobiDBLite consensus disorder prediction 56 85 - -
Lal13g0669 509 Gene3D Phosphorylase Kinase; domain 1 127 240 - -
Lal13g0669 509 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Lal13g0669 509 MobiDBLite consensus disorder prediction 56 93 - -
Lal13g0669 509 PANTHER OS08G0249100 PROTEIN 42 502 - -
Lal13g0669 509 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 42 502 - -
Lal13g0669 509 SUPERFAMILY Protein kinase-like (PK-like) 140 428 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0669 Lal-Chr13 4338713 4345975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0669 151 435 Receptor kinase-like Gene Family AT1G53420 44.521 2.82e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal13g0669 PK_Tyr_Ser-Thr 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0669 - - cam:101512181 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0199 13 1251729 1260840 Lal13g0669 13 4338713 4345975 ECH
Lal24g0175 24 1280119 1283480 Lal13g0669 13 4338713 4345975 ECH
Lal14g1956 14 18684129 18687648 Lal13g0669 13 4338713 4345975 ECH
Lal13g0669 13 4338713 4345975 Lal13g0669 13 4338713 4345975 ECH
Lal13g0669 13 4338713 4345975 Lal24g0525 24 3683855 3687763 LSH