Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0663 ATGTGTTGGTCTGAGGGAGAGAGAGACATGGCACTAGAAGCAGTGGTATATCCACAAAAACAAGACCCTTTTGATTATGGAGTAGTCAAAGATTTATATCACCATAACTTTCTTTCTGGTGCTACTAACTGTAGCTATGAACACCTCCTCAACTTTCAAAATGAACAAGAGCAACAAGGAGGGTCTATAAGTTTTGTAGAGAACAAAACAGAAGTTAATTATGATCACTTACAAAATGAGCTTAATTATATCTCTAATGAACCATCCTCAGAGGCCACTGCTCATAACTTAGATAGCTCAACCTCAACCTTTCGTCCTAAGAGGAGAAGAGCCAGAAGCAGAAAGAACAAGGAAGATATTGAGAACCAGAGAATGACTCATATTGCTGTTGAGCGTAACAGAAGGAAACAGATGAATGAGTATCTATCTGTTCTTAAGACTCTAATGCCAGATTCTTATGTCCAAAGGGGTGACCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGTGCTTGAGCAAAGGCTGCAATTCCTTAGTGCCAAAAAACAAACAGAAGGGAAGTCTGATGTGGTTGATGCAAATATGCCATTTTCTGAGTTCTTCACCTTTCCACAGTATTCAACAACTACCACTGGCTGTGATAATTCTGTGACCATAAGTGAAGAGCAAGCGGGCAAGGTTCAGTGTTGCATTGCTGATATAGAAGTGACAATGGTTGAAAGCCATGCAAATCTCAAGATAAGATCTAAGAAGAGGCCAAAACAGCTCTTGAAGATAGTATCTGGTTTGCATAGCATGCGCCTCATAATCTTGCACTTAAATGTTACTACCAGTGGTGAAATTATCCTTTACTCTCTCTGTGTTAAGGTAGAAGATGATTGCAAGTTGGGAACAGTGGATGATATATCTGCAGCTGTATACCAAATGCTAGATAGGATTCAACAAGAGGCAATATTGAATTAA 969 0.3911 MCWSEGERDMALEAVVYPQKQDPFDYGVVKDLYHHNFLSGATNCSYEHLLNFQNEQEQQGGSISFVENKTEVNYDHLQNELNYISNEPSSEATAHNLDSSTSTFRPKRRRARSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLKTLMPDSYVQRGDQASIIGGAINFVKVLEQRLQFLSAKKQTEGKSDVVDANMPFSEFFTFPQYSTTTTGCDNSVTISEEQAGKVQCCIADIEVTMVESHANLKIRSKKRPKQLLKIVSGLHSMRLIILHLNVTTSGEIILYSLCVKVEDDCKLGTVDDISAAVYQMLDRIQQEAILN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0663 322 MobiDBLite consensus disorder prediction 89 119 - -
Lal13g0663 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 185 IPR036638 GO:0046983
Lal13g0663 322 Gene3D - 108 188 IPR036638 GO:0046983
Lal13g0663 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Lal13g0663 322 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 322 - -
Lal13g0663 322 Pfam Helix-loop-helix DNA-binding domain 123 173 IPR011598 GO:0046983
Lal13g0663 322 SMART finulus 128 179 IPR011598 GO:0046983
Lal13g0663 322 PANTHER MAX DIMERIZATION, MAD 10 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0663 Lal-Chr13 4309879 4312925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0663 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.110 4.23e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0663 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0663 - - gmx:100782243 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0663 13 4309879 4312925 Lal13g0663 13 4309879 4312925 ECH
Lal12g0602 12 4343609 4345969 Lal13g0663 13 4309879 4312925 LSH
Lal5g0132 5 1185272 1188916 Lal13g0663 13 4309879 4312925 PCT
Lal3g1478 3 20667448 20669552 Lal13g0663 13 4309879 4312925 PCT
Lal13g0663 13 4309879 4312925 Lal5g0132 5 1185272 1188916 PCT
Lal13g0663 13 4309879 4312925 Lal3g1478 3 20667448 20669552 PCT