Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0662 ATGGGATTCTTCTCAATCTACGTTCGTAGCTGCGCTGATTCACCATCCAACAGTGTCCGTAATAACGGTAACGGAGGACGATCCCGCAGAGGGACACGTGGCCTCGACCCTTCTGTGATTGAAACATTCCCTACTCTCGAATATTCAGCGGTGAAAATACACAAGATTGGAAAGGGTGCTCTTGAATGCGCTGTTTGTCTTTGCGAATTTGAAGACTCTGAAACGCTGCGTTTGATCCCTGTCTGTGACCATGTGTTTCACCCTGAGTGCATAGATGAGTGGTTATCCTCTCACACTACATGCCCTGTGTGTAGAACCAACCTCGCTCCTCAACCGGGCGAGCCGGTTCCCGGTATCCCGATTATGTTCGGTGAACCGGGAGATATTGAAGCGCAGAACGAGGTGGTTCAAACTGCACCAGAACACCAAGTTGAGGAGAAAAATGAACATCCAGAAGTTGTTTTATTGAACCCAACGCTGAACCGGAACAGGATCAGAGGATCACGGTCGAGCCGAAAAAATAGATTCCCACGTTCACACTCGACCGGGCATTCTCTGATCCAACCGGGTGAAAACACGGAACGGTTCACTTTAAGATTACCTGTGGAAGTGAGGGAGAAGATATTTCAAAACCCGGAATTGCATAGGGCGAGAAGTATGGTTATGTTGCCAAGAGAAGGTAGCACAAGGCAGGGTTATCGAACCGGAACTGGTGAGGGAAGTAGTAGAGGAAGATTTTCGAGACGGTTGGACCGGGGATTTAAATCAGACCGGTGGGTTTTCACCATGGCGCCACCGTTCCTAGTCAGGGCATCGTCGATTAGGTCCCCAAGAGTGAATAATAACGCTACTGTACTCAACTCAGCTGCGCTTCCGTCACTGCCACCGCTGCCACAGCCGGCTGCCGTTGACTCTGCTCGCATTCAAGTTTAA 933 0.4995 MGFFSIYVRSCADSPSNSVRNNGNGGRSRRGTRGLDPSVIETFPTLEYSAVKIHKIGKGALECAVCLCEFEDSETLRLIPVCDHVFHPECIDEWLSSHTTCPVCRTNLAPQPGEPVPGIPIMFGEPGDIEAQNEVVQTAPEHQVEEKNEHPEVVLLNPTLNRNRIRGSRSSRKNRFPRSHSTGHSLIQPGENTERFTLRLPVEVREKIFQNPELHRARSMVMLPREGSTRQGYRTGTGEGSSRGRFSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVNNNATVLNSAALPSLPPLPQPAAVDSARIQV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0662 310 MobiDBLite consensus disorder prediction 13 36 - -
Lal13g0662 310 SMART ring_2 63 104 IPR001841 -
Lal13g0662 310 MobiDBLite consensus disorder prediction 164 191 - -
Lal13g0662 310 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Lal13g0662 310 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 249 - -
Lal13g0662 310 CDD RING-H2_EL5_like 62 105 - -
Lal13g0662 310 MobiDBLite consensus disorder prediction 228 247 - -
Lal13g0662 310 MobiDBLite consensus disorder prediction 13 28 - -
Lal13g0662 310 PANTHER RING FINGER DOMAIN-CONTAINING 1 249 - -
Lal13g0662 310 Pfam Ring finger domain 62 105 IPR001841 -
Lal13g0662 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 111 IPR013083 -
Lal13g0662 310 SUPERFAMILY RING/U-box 57 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0662 Lal-Chr13 4277895 4278827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0662 1 307 Rapid Response to Elicitors AT3G05200 45.570 1.78e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0662 K10664 - gmx:100810865 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0662 13 4277895 4278827 Lal13g0662 13 4277895 4278827 ECH
Lal13g0662 13 4277895 4278827 Lal24g0524 24 3679273 3680154 LSH
Lal3g1477 3 20662686 20663768 Lal13g0662 13 4277895 4278827 PCT
Lal13g0662 13 4277895 4278827 Lal3g1477 3 20662686 20663768 PCT