Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0659 ATGGAAAAAAAAAACAATAAAAAAACAAAAAAGTGTTGTGATAAAGGAGTCAGAATCGATCACACTCAGTTATTTTGGTACTTTGCCAATCTTAGGTTAGTTTCCGAGAAAACATCGTTAATCGTTACATTCTTCATATTTGAAGATCAAGACAAAGCATCACTTGTCATAGAGAGAAGGATGGAACATCAAGGGCACAGCCAGCACCCATCTATGGGGGTTGTTGGTGGTGGAGCACCAATGCAATATGGTTCTAATCCATACCAGCCCAACCAAACAACTGGGTCACCTGGCTATGGGACCGTTCAATCCACTGGTCAACCAGGCGGAGCTCAGATGGGACAAAATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACAACTACTTCAGCAACAGCTCCAAACCTTTTGGGCAAACCAATACCAAGAAATCGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCGAGGATCAAGAAGATTATGAAAGCTGATGAGGATGTTAGAATGATATCAGCCGAGGCACCAGTCATATTTGCAAGGGCATGTGAGATGTTCATATTAGAGTTAACCTTGCGCTCTTGGAACCACACCGAAGAGAACAAAAGGAGAACGCTTCAAAAGAATGACATTGCGGCAGCTATCAATAGAACTGATATCTTCGATTTCTTGGTTGACATTGTGCCTAGAGAGGACTTAAAAGATGAAATTCTTGCATCAATGCCAAGGGGAACAATGTCTGGTGCAGGAGGGCCTGCTGATGGTCTCCCTTATTGCTATATGCCACCGCAACATGCAGCCCAAGTTGGAGCTCCTGGTGTCATAATGGGTGAGCCTGTGATGGACCCTAATATGTATGCTCAGCAGTCTCATAACACCTACATGGCACCACAAATGTGGCCACAGCCACCAGAACAGAAGCAATCATCTCCTCCAGATCATTAG 957 0.4389 MEKKNNKKTKKCCDKGVRIDHTQLFWYFANLRLVSEKTSLIVTFFIFEDQDKASLVIERRMEHQGHSQHPSMGVVGGGAPMQYGSNPYQPNQTTGSPGYGTVQSTGQPGGAQMGQNQLAYQHIHQQQQQLLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAINRTDIFDFLVDIVPREDLKDEILASMPRGTMSGAGGPADGLPYCYMPPQHAAQVGAPGVIMGEPVMDPNMYAQQSHNTYMAPQMWPQPPEQKQSSPPDH 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0659 318 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 61 315 - -
Lal13g0659 318 MobiDBLite consensus disorder prediction 84 111 - -
Lal13g0659 318 Pfam Core histone H2A/H2B/H3/H4 124 219 IPR007125 GO:0003677
Lal13g0659 318 Gene3D Histone, subunit A 118 234 IPR009072 GO:0046982
Lal13g0659 318 SUPERFAMILY Histone-fold 85 228 IPR009072 GO:0046982
Lal13g0659 318 MobiDBLite consensus disorder prediction 299 318 - -
Lal13g0659 318 MobiDBLite consensus disorder prediction 83 111 - -
Lal13g0659 318 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0659 Lal-Chr13 4257679 4260262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0659 76 304 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.174 3.96e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal13g0659 CBFD_NFYB_HMF 8.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0659 K08066 - gmx:100527803 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0599 12 4301091 4301465 Lal13g0659 13 4257679 4260262 ECH
Lal13g0659 13 4257679 4260262 Lal13g0659 13 4257679 4260262 ECH
Lal12g0599 12 4301091 4301465 Lal13g0659 13 4257679 4260262 LSH
Lal5g0134 5 1214248 1217142 Lal13g0659 13 4257679 4260262 PCT
Lal18g0347 18 2975284 2977927 Lal13g0659 13 4257679 4260262 PCT
Lal13g0659 13 4257679 4260262 Lal5g0134 5 1214248 1217142 PCT
Lal13g0659 13 4257679 4260262 Lal18g0347 18 2975284 2977927 PCT