Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0649 ATGCAAGACATTTTTGGATCACTTCGGAGATCTTTCGTATTCCGTACTTCGCCGGAGAATAATAATGACAACGACGCCGCCATCGCCGGTAGAACAACAACCCTCGTTGATAAGATCGGTTCCTCCATCCGAAGTTCCAGATTGTTCTCCTCTAGAACCTCTCTCCCATCGCCGCCGCAAATCTCTATGATCCGGTGGCGCAAGGGCCAGTTAATCGGATGTGGTGCATTTGGCCAAGTTTACATGGGAATGAATCTCGATTCTGGAGAGCTTCTCGCTGTTAAGCAGGTCTTGATTGCCGCAAATAGTGCTTCCAAAGAGAAGGCACAGGCTCACATAAAGGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCGCATCCCAACATCGTTAGATATCTGGGCACCGTCAGAGAGGAGGACACCATCAATATTTTCCTTGAGTTTGTTTCTGGTGGATCCATATCATCACTTTTGGGGAAGTTTGGAGCTTTCCCCGAGACTGTCATTAGAATCTACACGAAACAGTTACTGCTAGGACTTGAGTACTTGCACAAAAATGGGATCATGCACAGAGATATTAAGGGGGCAAATATTCTAGTAGATAACAAAGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAACACGTTGCTGAGCTGGCTACCATTTCTGGTGCCAAGTCTATGAAAGGTACACCATATTGGATGGCTCCTGAAGTTATTCTCCAGACAGGGCATAGCTTCTCTGCTGATATATGGAGTGTTGGCTGTACTCTGATTGAGATGGCTACTGGAAAGCCTCCCTGGAGCCAGCAGTACCAAGAGGTTGCTGCTCTCTTTCATATAGGGACAACAAAGTCTCATCCACCTATCCCTGATCATCTCTCTGTTGAAGGAAAGGATTTTCTTCTAAAATGTTTGCAGAAGGAACCAATTTTGAGGGCATCAGCACCGGAACTGCTGCAGCATCCCTTTGTTACTGGTGAGAAGATGGATTCTGTTCCTTTGTCATATGCTGCCATGAGGAATTTTGAAGCTTATTCGCCACCGTGTGCCCAAACTGTTGATTCCTCCCTGTGCAGCACAGCTGTAAATCCTCAGGACTTTGGAAATAAACAGTTGTGGGGAGTGAATGATGATGACATGTGTGAGATAGATGACAACGATGAGTTCTCACAGAATAATGTCAAATACAGATCTTTGATGTCCAAAGATATTGAGAGTTTCAACCCTATGTCCGATCCGTCTGATGATTGGGGGAGTAAATTTGATCCTAGTCCAGACTTGGAACAGAGAGAAGTTGGTTTTGACACCAATGAAAGTTACATGCCACCCGGTCACTCTGGGGCTTTTAATGAGGAAGAGAAAGATTTTTCCTTTCCGTGCGTGCCTTCTCTGTCTGAGGAAGACGATGAGCTCATGTTGACAAAAATAAAAGCCTTTTTGGATGAGAAGGTTTTCGAACTGAAAAAACTGCAAACACCTTTACACGAAGAGTTCTATAACAGTTTAAATACGTCTTGTTTTCCCAATGTGACTGATAGTGCAAGTGATGAACCTAGTCCAAAATACTTGAAATTACCTCAACGTAGGTCACCAAGTCGGTTACCAGTTGGCAACCCATCTATAGTGGTTGACAATGCTGGAAGTCCTGGGAGTAATGGAAGATCCCCGTCAAATGTCAGCAATGTCAATGATGGTTCACCGGACATTCGAGCACCTCCCCTTAATGAATTGGAAGGACTGCCTGTAGACTCCCAGCAGGAGCCAAGCAGCCTGAGTGTAAGCTTATCGCCAGAGTTAAAGAAGATGTGGGGAGAAGAGCTTGCCATGGAGATGGAGAGACAACGAGAGAGACGCCAAGCGGGTAGGGCGGGGAATACATCATCACCAAAGGATCTGGCTTTACATCGGCCGAGAGAGCGGACAAGATTTGCATCTCCCAGCAAATAA 1959 0.4548 MQDIFGSLRRSFVFRTSPENNNDNDAAIAGRTTTLVDKIGSSIRSSRLFSSRTSLPSPPQISMIRWRKGQLIGCGAFGQVYMGMNLDSGELLAVKQVLIAANSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTINIFLEFVSGGSISSLLGKFGAFPETVIRIYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKHVAELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTLIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSVEGKDFLLKCLQKEPILRASAPELLQHPFVTGEKMDSVPLSYAAMRNFEAYSPPCAQTVDSSLCSTAVNPQDFGNKQLWGVNDDDMCEIDDNDEFSQNNVKYRSLMSKDIESFNPMSDPSDDWGSKFDPSPDLEQREVGFDTNESYMPPGHSGAFNEEEKDFSFPCVPSLSEEDDELMLTKIKAFLDEKVFELKKLQTPLHEEFYNSLNTSCFPNVTDSASDEPSPKYLKLPQRRSPSRLPVGNPSIVVDNAGSPGSNGRSPSNVSNVNDGSPDIRAPPLNELEGLPVDSQQEPSSLSVSLSPELKKMWGEELAMEMERQRERRQAGRAGNTSSPKDLALHRPRERTRFASPSK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0649 652 Coils Coil 99 126 - -
Lal13g0649 652 MobiDBLite consensus disorder prediction 514 652 - -
Lal13g0649 652 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 607 - -
Lal13g0649 652 Pfam Protein kinase domain 67 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0649 652 MobiDBLite consensus disorder prediction 548 569 - -
Lal13g0649 652 MobiDBLite consensus disorder prediction 586 600 - -
Lal13g0649 652 Gene3D Transferase(Phosphotransferase) domain 1 64 358 - -
Lal13g0649 652 CDD STKc_MAPKKK 65 328 - -
Lal13g0649 652 SUPERFAMILY Protein kinase-like (PK-like) 65 329 IPR011009 -
Lal13g0649 652 ProSiteProfiles Protein kinase domain profile. 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0649 652 MobiDBLite consensus disorder prediction 607 624 - -
Lal13g0649 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Lal13g0649 652 SMART serkin_6 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0649 652 MobiDBLite consensus disorder prediction 636 652 - -
Lal13g0649 652 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 607 - -
Lal13g0649 652 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0649 Lal-Chr13 4202330 4211848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0649 1 652 MAP Kinase Kinase Kinase AT1G54960 52.518 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal13g0649 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0649 K20606 - gmx:100779001 860.907