Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0647 ATGGACAATAATGAGCAAGATAGAACTTTGCCCATTGCAAATGTGGGTAGAATAATGAAGCAAATTCTTCCTCCTAGTGCAAAGATTTCAAAAGAAGGTAAACAATTAATGCAAGAGTGTGTGACAGAGTTCCTAAGTTTTGTGACTTCAGAGGCATCTGACAAGTGTCATAAGGAGAATCGAAAGACCGTGAATGGTGATGACATCTTTTGGGCTCTAGGGTCCTTAGGGTTTGATAACTATGCTGAAGCCATAGGAATGTACTTGCATAAGTTCAGGCAGAATGAAAGGGAGAAAATGAATCAACACAAGTATCATAGTTTCAATGAAGAATCTGCAACAAAAACAAGAGGGCAACATGAGAATCAAACTAAAACTTCTCCTTCAGATCAATCTGGATGA 402 0.3831 MDNNEQDRTLPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFLSFVTSEASDKCHKENRKTVNGDDIFWALGSLGFDNYAEAIGMYLHKFRQNEREKMNQHKYHSFNEESATKTRGQHENQTKTSPSDQSG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0647 133 MobiDBLite consensus disorder prediction 119 133 - -
Lal13g0647 133 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 126 - -
Lal13g0647 133 SUPERFAMILY Histone-fold 6 115 IPR009072 GO:0046982
Lal13g0647 133 MobiDBLite consensus disorder prediction 98 133 - -
Lal13g0647 133 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Lal13g0647 133 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lal13g0647 133 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lal13g0647 133 Gene3D Histone, subunit A 1 132 IPR009072 GO:0046982
Lal13g0647 133 MobiDBLite consensus disorder prediction 98 118 - -
Lal13g0647 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Lal13g0647 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0647 Lal-Chr13 4184867 4185268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0647 5 124 CCAAT-HAP3 Transcription Factor Family AT1G09030 62.810 2.25e-54 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal13g0647 CBFD_NFYB_HMF 1.5e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0647 K08065 - gmx:100815151 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0647 13 4184867 4185268 Lal13g0647 13 4184867 4185268 ECH