Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0646 ATGACAGTTCTTTTCTACGTGTACCAGGAATTTGTTCACTCGAATCAGAACACATTGCTGGTTGTGATTCTCAGTTCTGGGTTCCTTCTTTTCTGTTGGAAATTTGGAATTAATTTGGCTTGCACCCTTCAAAACATAATGGATCAAGCACGAACGACCTCAGGGAATGGCGAGGACAATGTTGGGATTCCAGATGATTTGCGGTGCAAGAGATCGGACGGGAAACAGTGGAGATGCACTGCGATGTCCATGCCTGACAAGACAGTGTGCGAGAAGCACTACATCCAGGCTAAGAAAAGGGCTGCCAATTCTGCAATGAGAGCAAACCTCAAGAAAGCTAAGAGGAAGTCATTGGGTGAGTCTGATATTTATTTGGAGAGCAAAAGTGATGATCTTGATGTGCCCCTATCATCTATTGAAGCTGAGGAACACCGTTCTGGAAAGAAGTTATTGGATAAGATCTCCAAAAATCAGTTCCGTTATAACCCTGACAAGATAAAGGATTCTGCCATGCACCATGCTATGAATCCAAATGATGATGATTCAGAGGATGAGGCAGATGCCCCTCTCTATGAAGAGAATTGGGTGTCCAACGATTCGCCCGCCGCTTCTGGTGAGGACTCATCCAGGAAACAAATGCAGATGAGCTTGGATGCTAATGCTACGACGGAACATTCTGATGGAAGTTCGGGTTCTTCCCAGGACACTGGTGGGCAAACTTGCCATCAGTGCCGGAGGAATGACAAAGAGAGAGTTACTTGGTGCCTCCGGTGTGATAGGAGAGGATACTGTGATAACTGTATATCTACATGGTACTCTGACATTTCATTGGATGAAATTCAGAGGTTATGTCCTGCGTGCCGTGGTATTTGTAATTGCAAATCTTGCTTACGTAGTGATAATTCCATAAAGGTTCGGATAAGGGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACGTGCTGCTGTCATCTGTGCTTCCTGTAGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGTGTGGTGCTGAAATAGATCTTCCCAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTTTGTAGGATACCCATCATCGATTATCATCGACGGTGTCCAAATTGCTCGTATGATTTGTGCCTTAATTGCTGCCGAGATCTCCGAAAAGCAACTATAGATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAGCTTCTGACCGGAATATATTAAGTAAATTTCCTGAGTGGAGATCCAATGACAATGGAAGCATTCCATGCCCCCCGAAGGACTGTGGTGGCTGCGGTTATTTGTCATTAAATTTAAGCCGGATTTTCAAGAAGAATTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGTAGGATTAACAATGCTGATGATCTACCAGAAACTGAGTTGAATGCTCTCAGAGTTTGCCAATATTCTCATAGAGAGGCTGGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATCTCAAAACTGATGGGATTGACAATTTTAGGAAGCACTGGAAAAGCGGTAAACCAATTATTGTTAAGCAAGTATTTTCTAGGTCATCCATCTCCAGCTGGGATCCCTTGGTCATCTGGAAAGGGATTCGCGAGACAACAGACGAAAAAATGAAAGATGAAAACAGAATTGTTAAGGCCATAGATTGCTTAGACAGATCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATACTCCGAGGGGGGTGTTAATGAAAATGGTTGGCCACGGATATTGAAGTTGAAAGACTGGCCTTCACCTAGTGCATCTGAAGAATTTCTGTTGTACCAAAGACCTGAATTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTAAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGGCCCAAGATTTATATATCTTATGGGATAAGTGATGAGCTTGGGAGAGCTGATTCAGTGACAAATCTTCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAATGAGTCAAAGCTGAAGGACTGTCAGAGAACTAATATTGAAATGATACAAAAAGATTATAAGGAATCTGATGTGAAAGAATCACCAGGGGATCCCCAAATATGTTCAAGAGGGAGTTCACCTAATTCATCAGTTGGTGCCAATAATAATGAACTGGATTTGGAGTCAGACCAGAATAAGTCAATTATGGATCAAGGATTTGAATTTAATCCCATTGTTGAAGGGAATATGGTCAATGGTGAACTTCCATTAAAACAAAATGGAGATGTCTCTGAGAAAACAAATCCTGGACTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAAGAATTTGGGAAGACAAATGAGATAGTAAATGAATTTGTCACATGGTCTCTTTATGATGGAGCTGTTTTTCTCGACAGACACCATAAAAGCAAGTTGAAGGAAGAATTTGGTGTGGAGCCATGGTCATTTGAACAGAACATAGGGGAGGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCCAGAAATGTTCATTCCACAGTTCAATTGGGCCTTGATTTCTTATCTCCGGAAAGCCTAGGGGAAGCCGTAAGATTGGCAGAGGAAGTCCGATGTCTACCTAACGAACATGAAGCGAAACTTCAAGTATTGGAGGTTGGGAAGATATCTCTCTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCTCAGAGATTGGATATGGAGATCCTAATTTGACAGCAATGGTTTCTGAGAATTACGAGAAAATGGTGAAGCGAAGGCAAATTACTTGTGCTTGA 2937 0.4171 MTVLFYVYQEFVHSNQNTLLVVILSSGFLLFCWKFGINLACTLQNIMDQARTTSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLGESDIYLESKSDDLDVPLSSIEAEEHRSGKKLLDKISKNQFRYNPDKIKDSAMHHAMNPNDDDSEDEADAPLYEENWVSNDSPAASGEDSSRKQMQMSLDANATTEHSDGSSGSSQDTGGQTCHQCRRNDKERVTWCLRCDRRGYCDNCISTWYSDISLDEIQRLCPACRGICNCKSCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLCGAEIDLPRTKLNADEQMCCNFCRIPIIDYHRRCPNCSYDLCLNCCRDLRKATIDHNKEPQTEQAKASDRNILSKFPEWRSNDNGSIPCPPKDCGGCGYLSLNLSRIFKKNWVAKLVKNVEEMVSGCRINNADDLPETELNALRVCQYSHREAGDDNYLYCPTSEDLKTDGIDNFRKHWKSGKPIIVKQVFSRSSISSWDPLVIWKGIRETTDEKMKDENRIVKAIDCLDRSEIDIELGQFMKGYSEGGVNENGWPRILKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRADSVTNLHFNMRDMVYLLVHTNESKLKDCQRTNIEMIQKDYKESDVKESPGDPQICSRGSSPNSSVGANNNELDLESDQNKSIMDQGFEFNPIVEGNMVNGELPLKQNGDVSEKTNPGLLWDVFRRQDIPKVTEYLKMHWKEFGKTNEIVNEFVTWSLYDGAVFLDRHHKSKLKEEFGVEPWSFEQNIGEAIFVPAGCPFQARNVHSTVQLGLDFLSPESLGEAVRLAEEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGSEIGYGDPNLTAMVSENYEKMVKRRQITCA 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0646 978 PANTHER JMJC DOMAIN PROTEIN JMJ24 56 967 - -
Lal13g0646 978 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 56 967 IPR045109 GO:0032454|GO:0033169
Lal13g0646 978 SUPERFAMILY Clavaminate synthase-like 520 915 - -
Lal13g0646 978 ProSiteProfiles JmjC domain profile. 614 908 IPR003347 -
Lal13g0646 978 ProSiteProfiles WRC domain profile. 63 107 IPR014977 -
Lal13g0646 978 MobiDBLite consensus disorder prediction 730 748 - -
Lal13g0646 978 Pfam JmjC domain, hydroxylase 797 887 IPR003347 -
Lal13g0646 978 Gene3D Cupin 503 917 - -
Lal13g0646 978 ProSiteProfiles Zinc finger RING-type profile. 241 288 IPR001841 -
Lal13g0646 978 SMART cupin_9 621 908 IPR003347 -
Lal13g0646 978 MobiDBLite consensus disorder prediction 167 186 - -
Lal13g0646 978 MobiDBLite consensus disorder prediction 193 242 - -
Lal13g0646 978 MobiDBLite consensus disorder prediction 197 241 - -
Lal13g0646 978 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 236 301 IPR018866 -
Lal13g0646 978 MobiDBLite consensus disorder prediction 716 748 - -
Lal13g0646 978 Pfam WRC 64 104 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0646 Lal-Chr13 4177219 4182742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0646 64 104 GRF Transcription Factor Family AT3G13960 46.341 2.01e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal13g0646 JmjC 1.6e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0646 K15601 - gmx:100801287 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0646 13 4177219 4182742 Lal13g0646 13 4177219 4182742 ECH