Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0636 ATGGCTGATGCTAAGACACAAATTCAATCTCTCAGGAAATGGGTCGTTGAACACAAGCTTCGTACTGTTGGGTCTCTTTGGCTTAGTGGTATTACTGGTTCAATAGCCTACAATTGGTCTCGCCCCAACATGAAAACTAGCGTCAAGATCATTCACGCCAGGTTGCATGCACAGGCTCTTACACTGGCTGCATTAGCTGGAGCTGCAGTTGTAGAATACTATGATCATAAGACAGAAGGAAAGGGTAAGTCCAATGGAGTGTGTACTTCTCAAGGTGGTCGCTTTCCTGTCTTCAAATTAGAAGGTAACCCTCCCAAAAAGGGTCCTAAAGATTTGTCCCTTTGCCGGGTTTTTCGGAAAAAGACTTGCTGTGACATATCCCATACTCATCCTGCACTGCTGACTGTGAGGAAGCTTGCTTCTAGTGGGGAAGCTAGCCCAGAGTGCTTGCACTTATGGGAAGTATTGGAATGTTCAATATGTGATCCACATGTTGGTACTCAGCCTGGACCTCCTCTTATTTGTGCATCATTCTGCGAGAGACTTTATGAGTCATGCTCAAGTGCTTACTTCTCTATGGATTCCAAAACACAGAGTCTTGCACCATGTGGAGTAAATGACTTTGTATGTGGTAGGGCTGCTGAATGGGTCTCCAACGGTACAGATCTTTGTCATGCTGCAGGTTTCCAAGTGAAACCAGCTGATAGGCATGGTGCGTTGGAAGGAACATTTTGCTATGGTGATAAATCAAGTCTAAGTTCAGTTTCTGATTCATGGAAGGCTCCAAAATTTCAGTTCACCCCCGAAGGTGACCGATCCAGAATGTTGGATGATTTCCAACAATGGGCGAGGGAAATGCCATTTAATGAAAGAGTTTCTTGGGCTATAGGAGGGATGGTTCTAACAGCGGGCTTGTTATTTATAAGCAGTCTCAGTCACCGTGCGAAGCATCGAGGAGGAGGAGGAGGCGGAGGAGCTCGTCAAGAACCCGAAGAAGCTGCAATGGGAATCGATCTTAAAGCCGGTGGTAAGAGCAAGAAGACCAAAAGAACAGCACCTAAGTCTAATGATATCTACCTTAAGCTCTTGGTTAAGCTGTACCGCTTCCTTGTTCGGAGAACTGGTAGCAAGTTCAATGCTGTGATACTTAAGCGTTTGTTCATGAGCAAAATTAACAAGCCTCCACTTTCATTGTCAAGGTTGATTAAGTATACCAAGGGCAAGGAAGGTAAGATTGCTGTGGTGGTTGGGACTATAACTGATGATATTCGTTCATACGAAGTACCAGCCTTGAAAGTTACAGCACTCAGGTTTACTGAGACTGCTCGTGCAAGAATAGAAAAGGCAGGTGGTGAATGCTTGACATTCGATCAATTGGCTCTTAGGGCCCCTCTTGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCGCACAGCCACACCAAGCCTTACGTGCGAGCTAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCAGAGGATTTAGGGTTTGA 1566 0.4598 MADAKTQIQSLRKWVVEHKLRTVGSLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKTEGKGKSNGVCTSQGGRFPVFKLEGNPPKKGPKDLSLCRVFRKKTCCDISHTHPALLTVRKLASSGEASPECLHLWEVLECSICDPHVGTQPGPPLICASFCERLYESCSSAYFSMDSKTQSLAPCGVNDFVCGRAAEWVSNGTDLCHAAGFQVKPADRHGALEGTFCYGDKSSLSSVSDSWKAPKFQFTPEGDRSRMLDDFQQWAREMPFNERVSWAIGGMVLTAGLLFISSLSHRAKHRGGGGGGGARQEPEEAAMGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKPPLSLSRLIKYTKGKEGKIAVVVGTITDDIRSYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFEKARGKRNSRGFRV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0636 521 Pfam Folate receptor family 104 231 IPR018143 -
Lal13g0636 521 Pfam Hypoxia induced protein conserved region 17 67 IPR007667 -
Lal13g0636 521 Gene3D - 335 521 - -
Lal13g0636 521 ProSiteProfiles HIG1 domain profile. 1 83 IPR007667 -
Lal13g0636 521 Pfam Ribosomal protein 60S L18 and 50S L18e 336 521 IPR021131 -
Lal13g0636 521 PANTHER 60S RIBOSOMAL PROTEIN L18 331 521 IPR000039 GO:0003735|GO:0005840|GO:0006412
Lal13g0636 521 PANTHER BNAC02G39900D PROTEIN 331 521 - -
Lal13g0636 521 Gene3D - 20 78 - -
Lal13g0636 521 SUPERFAMILY Ribosomal proteins L15p and L18e 354 473 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0636 Lal-Chr13 4111568 4120482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0636 337 521 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 3.03e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0636 K02883 - gmx:100792179 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0636 13 4111568 4120482 Lal13g0636 13 4111568 4120482 ECH