Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0633 ATGACTAGAAAGAAGGTGAAACTTGCATTCATACTCAATGATTCTGCAAGGAAAGCAACATATAAGAAAAGGAAGAAGGGTTTGTTAAAGAAGGTGGATGAACTTAGCACCCTTTGTGGCATTGAAGCTTGTGCTATAGTATATAGCCCTTATGAGCAGCAACCAGAGGTTTGGCCATCACCATGGGGGGTCCAAAGGGTGCTTTCCAAGTTCAGGAACATGCCGGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGATTTTCCTGAAACAAAGGATTCTGAAGGCTAAAGAGCAAGTAAAGAAACTGAGGAAAGAAAACCGGGAGAAGGAGATGACTCAGCTCATGTTTCAGTGTCTTAGTGCTGGTAAGATACTACACAATAACTTGAACATGATTGATTTGAATGATCTTGCTTGGCTCATTGACCAGAACTTGAAGGACATCGGCCGAAGGATGGAAACACTAGAAAAAAATGGACAGGTGACTCAAGGCCAGTCCCATATGGCAGCACCACCACCACAACAACAACCACCAGCACTTCCAGGTAGGGTGGCGAAGAACGAAGAAATGACATTGATGGATCATGGCCATGGGCTGGAGATGAATGCTGAAACCGTGCCAAGGCAGTGGTTCATGGACATGATGAATGGTAATGGTAATGGTCATGTAAATGAGACAATGCCATTTGGAGAAACCAATCTCCAGAATGGCTTTTGGCCTAACCCATTACTACCATAA 744 0.4395 MTRKKVKLAFILNDSARKATYKKRKKGLLKKVDELSTLCGIEACAIVYSPYEQQPEVWPSPWGVQRVLSKFRNMPELEQSKKMVNQEIFLKQRILKAKEQVKKLRKENREKEMTQLMFQCLSAGKILHNNLNMIDLNDLAWLIDQNLKDIGRRMETLEKNGQVTQGQSHMAAPPPQQQPPALPGRVAKNEEMTLMDHGHGLEMNAETVPRQWFMDMMNGNGNGHVNETMPFGETNLQNGFWPNPLLP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0633 247 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lal13g0633 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Lal13g0633 247 MobiDBLite consensus disorder prediction 161 180 - -
Lal13g0633 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 210 - -
Lal13g0633 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal13g0633 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal13g0633 247 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal13g0633 247 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0633 Lal-Chr13 4103996 4104739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0633 1 195 Type I MADS-box Gene Family AT5G48670 57.436 7.00e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g0633 SRF-TF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0633 - - gmx:100813231 305.449