Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0629 ATGAGTAATACTGAATTATCACGGATGAATAAACCACTTGTTCCTTTGGCGACTTTGATTGGCCGTGACATAGGGAATTTAAAAATCAAGAAGCCTTTTGTGAAGTATGGGCAGTCTGGTTTGGCAAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCAGAGGATTCATGGGGATCCATCAACACAATTTTCTGTTTTCGCGATGTTTGATGGGCATAACGGTATGTCTGCTGCTGTTTTTGCGAAGGAAAACATACTACGTAATGTTATGAGTGCAATACCACAGGGTATCAGCAGGGATGAGTGGCTTCAAGCTCTGCCTCGCGCTCTAGTTGTTGGTTTTGTGAAAACTGACATAGAATTTCAGAAAAAAGGGGAAACTTCTGGAACAACAGCCACATTTGTTCTGATTGATGGATGGACTGTTACCGTTGCATCTGTTGGGGATTCCCGTTGCATATTAGACACCCAGGAAGGTGTTGTTTCTCTCTTGACGGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGAGCGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGGCTCAATATATATGGAGCCAATGCGGTAGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACATGGATGTGGGAGAGTATATTGTGCCAATACCACATGTTAAGCAAGTCAAGCTTTCGAATGCTGGCGGAAGGCTTATAATAGCCTCTGATGGTATTTGGGATGCTTTATCTTCTGATATGGCTGCCAAATCTTGTCGGGGCCTACCTGCTGAGCTTGCTGCAAAGCTGGTGGTGAAGGAAGCTCTAAGGTCAAGAGGGCTGAAAGATGATACAACTTGCCTTGTTGTAGATATAATTCCTTCAGACCGTCCTGTGTTACCAACAATTACAAGAAAGAAGGATAATATACTAACATGCCTTCTCTTTAGAAAGAAATCTCAAGATTCTTCAAACAAAGCTTCTAAGAAGCTTTCTGCAGTTGGTGTTGTGGAGTTATTTGAAGAGGGTTCGGCAATGCTTACAGAGAGGCTGGGTAAGGAATCTCCATTTAATATGAATTCTGGGATTTTCCGCTGTGTTGTCTGCCAAGTGGATCAACCTCCGGGTGATGGTTTAGCAGTGAATTCTGGGCCTTTCTTCCCATCCGCATCGAAGTCATGGGAAGGTCCATTTCTCTGCACAAACTGTCAGAAGAAGAAAGACGCCATGGAAGGAAAAAGGTATAGAATTCCCATTGTGGACAACATAATAATCTAG 1293 0.4362 MSNTELSRMNKPLVPLATLIGRDIGNLKIKKPFVKYGQSGLAKKGEDYFLIKTDCQRIHGDPSTQFSVFAMFDGHNGMSAAVFAKENILRNVMSAIPQGISRDEWLQALPRALVVGFVKTDIEFQKKGETSGTTATFVLIDGWTVTVASVGDSRCILDTQEGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIYGANAVGPLRCWPGGLCLSRSIGDMDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDRPVLPTITRKKDNILTCLLFRKKSQDSSNKASKKLSAVGVVELFEEGSAMLTERLGKESPFNMNSGIFRCVVCQVDQPPGDGLAVNSGPFFPSASKSWEGPFLCTNCQKKKDAMEGKRYRIPIVDNIII 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0629 430 PANTHER ALPHABET, ISOFORM E-RELATED 2 422 - -
Lal13g0629 430 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Lal13g0629 430 CDD PP2Cc 43 297 IPR001932 -
Lal13g0629 430 SMART PP2C_SIG_2 51 297 IPR001932 -
Lal13g0629 430 Gene3D - 33 302 IPR036457 -
Lal13g0629 430 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Lal13g0629 430 SMART PP2C_4 23 295 IPR001932 -
Lal13g0629 430 Pfam Protein phosphatase 2C 61 280 IPR001932 -
Lal13g0629 430 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0629 Lal-Chr13 4086189 4089792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0629 1 419 PP2C-type Phosphatase Gene Family AT1G09160 73.571 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0629 - - gmx:100794630 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0629 13 4086189 4089792 Lal13g0629 13 4086189 4089792 ECH
Lal12g0583 12 4166148 4169629 Lal13g0629 13 4086189 4089792 LSH
Lal18g0370 18 3160917 3164253 Lal13g0629 13 4086189 4089792 PCT
Lal13g0629 13 4086189 4089792 Lal18g0370 18 3160917 3164253 PCT