Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0627 ATGGCGACGAGGAATCGCAGTTTGATTTTCAGAAAGCACAGAGATGCATTGAAGAGTGTTCGAGTTCCTTCATACTCTTCGCCGTCGGCTTCCACATCTTCCGGCGGCGGCCCCGTAATCGAATTGGTCAGCACCTCACTTCTCAACTCTAATCGTTCTTATGCTCCGCTTAGCACCGAGGATCCCGGTAGTTCAAGTAAGGGTTTACATCCTATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAAATATCAGCATATGTGCAACGTGCACGTACAAAAATGGCAGAGCTGGCCAATGCTCACGCAAAGGCCTTAATGCCATCATTTGGAGATGGCAAGGAAGATCAACATGCTATTGAGTCTCTTACACGCGAGATAACAGACTTGATAAAGAAATCAGAGAGGGGACTGCGACGACTCTCTGCTGCCGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAGGAAACAATCAACATATTTGAAGTGCCTTAGGCAGCAAAAAGAGGGTCAAGATGGGATCGATCTTGAGATCAACATGAATGGGAGTAAAGCCAGATATGAAGATGATGACTTGGATAATATGATATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACTGTAGAAAGAGAAAAGGAGATCCAACAAGTTGTGGAATCTGTAAATGAGCTTGCTCAGATTATGAAGGATTTGTCGGTATTAGTGATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTCCAGAAGGCTGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACGACGCTTCTTATCATGTGCTTAGTTATGCTGGTTCTCTTAATCATTAAAGAAATTATTTTGTGA 981 0.4455 MATRNRSLIFRKHRDALKSVRVPSYSSPSASTSSGGGPVIELVSTSLLNSNRSYAPLSTEDPGSSSKGLHPITVGLPPAWVDVSEEISAYVQRARTKMAELANAHAKALMPSFGDGKEDQHAIESLTREITDLIKKSERGLRRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRRKQSTYLKCLRQQKEGQDGIDLEINMNGSKARYEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATTLLIMCLVMLVLLIIKEIIL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0627 326 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 321 - -
Lal13g0627 326 SMART SynN_4 71 186 IPR006011 GO:0016020
Lal13g0627 326 SMART tSNARE_6 225 292 IPR000727 -
Lal13g0627 326 CDD SNARE_syntaxin16 235 291 - -
Lal13g0627 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Lal13g0627 326 PANTHER SYNTAXIN 1 321 IPR045242 -
Lal13g0627 326 Pfam SNARE domain 266 318 IPR000727 -
Lal13g0627 326 ProSitePatterns Syntaxin / epimorphin family signature. 236 275 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal13g0627 326 Gene3D - 77 284 - -
Lal13g0627 326 SUPERFAMILY t-snare proteins 76 285 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0627 Lal-Chr13 4073138 4076823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0627 1 326 SNARE and Associated Proteins AT5G26980 76.453 4.16e-180 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0627 K08489 - gmx:100796741 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0627 13 4073138 4076823 Lal13g0627 13 4073138 4076823 ECH
Lal13g0627 13 4073138 4076823 Lal24g0494 24 3476794 3481499 LSH