Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0626 ATGTCGTATCGCCCTACCAGCAACGCAAGAACGGATAGCCGTCGGAACCGATACAAGGTGGCGGTGGACGCCGAAGAAGGTCGTAGAAGGCGTGAGGACACCATGGTGGAGATCCGTAAGAACCGTAGAGAAGAGAGTTTGCAGAAAAAGAGGCGCGAAGGCCTTCCACCTCAGCAGGTTCCTTCTTCCATTCTCTCTACTGCGGTGGAGAAGAAGTTGGAACACCTACCTACTATGGTTGCAGGTGTTTGGGCAGAAGATAATAACCTTCAACTCGAGTCAACTACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGTCCGCCAATCGAGGAAGTTATACAAACTGGAGTAGTTTCTCGGTTTGTTGAATTTCTGATGAGAGAAGACTTTCCACAGCTGCAGTTTGAGGCAGCTTGGGCTTTGACGAATATAGCCTCTGGGACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCAATTTTCGTGAAGCTCCTTGCTTCACCTAGTGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATATTGCTGGGGATTCTCCCAGATGTCGTGATCTTGTTCTCGGTCATGGGGCTTTGCTTCCCCTGTTGTCACAATTGAATGAACATGCAAAGCTCTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGACCAGGTTAAACCTGCACTTCCTGCACTTGCCCGTCTTATCCATTCAAATGATGAAGAGGTCTTGACTGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGCCTTGTTGAGCTTTTGCTGCACCCTTCCCCTTCCGTGCTAATTCCCGCTCTTCGTTCTGTTGGAAATATTGTGACTGGAGATGATATTCAAACTCAGGTTATCATCAACCATCAAGCTCTCCCTTGCCTTTTGAATCTGTTGACCAATAATTATAAGAAAAGCATAAAGAAAGAGGCTTGTTGGACCATCTCGAACATCACAGCTGGGAATAATCAGCAAATTCAGACTGTAGTTGAGGCTAATATAATTGGCCCTTTGGTCAACCTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCAGCTTGGGCTATCTCAAATGCTACGTCTGGTGGATCTCATGATCAAATCAAGTACCTGGTAAGTCAAGGGTGTATCAAGCCGTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATCGTGACAGTTTGCCTGGAAGGCCTTGAAAACATCTTGAAGGTCGGGGAAGCTGATAAAAATATGGGCTCTACTGGTGACGTGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGATTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCAGTGAAAATTCTGGAGACATACTGGTTGGAGGAAGAAGATGAGACTCTGCCTCCTGGTGCTGCTGTTCAATCAGAGTTCAACTTTGGTAGCACTAATGCTCCCTCTGTGCCTTCTGGTGGATTCAACTTTAATTAG 1599 0.4565 MSYRPTSNARTDSRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLPPQQVPSSILSTAVEKKLEHLPTMVAGVWAEDNNLQLESTTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNIAGDSPRCRDLVLGHGALLPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRSVGNIVTGDDIQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNNQQIQTVVEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGSTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETLPPGAAVQSEFNFGSTNAPSVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0626 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Lal13g0626 532 MobiDBLite consensus disorder prediction 10 52 - -
Lal13g0626 532 PANTHER IMPORTIN SUBUNIT ALPHA 4 522 - -
Lal13g0626 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lal13g0626 532 PANTHER IMPORTIN ALPHA 4 522 - -
Lal13g0626 532 Gene3D - 12 52 IPR036975 GO:0006606
Lal13g0626 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal13g0626 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lal13g0626 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Lal13g0626 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Lal13g0626 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lal13g0626 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Lal13g0626 532 SUPERFAMILY ARM repeat 7 501 IPR016024 -
Lal13g0626 532 Gene3D - 74 497 IPR011989 -
Lal13g0626 532 SMART arm_5 275 315 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 149 189 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 360 400 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 317 358 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 106 147 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 234 273 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 403 443 IPR000225 GO:0005515
Lal13g0626 532 SMART arm_5 190 232 IPR000225 GO:0005515
Lal13g0626 532 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0626 Lal-Chr13 4064269 4069968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0626 239 465 U-box Gene Family AT2G23140 23.246 2.25e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0626 K15042 - gmx:100789135 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0581 12 4150303 4155549 Lal13g0626 13 4064269 4069968 ECH
Lal13g0626 13 4064269 4069968 Lal12g0581 12 4150303 4155549 ECH
Lal13g0626 13 4064269 4069968 Lal13g0626 13 4064269 4069968 ECH
Lal13g0626 13 4064269 4069968 Lal24g0493 24 3468276 3474409 ECH
Lal14g1569 14 16293071 16297025 Lal13g0626 13 4064269 4069968 ECH
Lal7g0966 7 15967116 15971665 Lal13g0626 13 4064269 4069968 ECH
Lal12g0581 12 4150303 4155549 Lal13g0626 13 4064269 4069968 LSH
Lal13g0626 13 4064269 4069968 Lal24g0493 24 3468276 3474409 LSH