Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0622 ATGGAGATTGAGAAAAAACGTTCAAAGGGAAGCTTCCTTAGCTTCTTTGATTGGAATGTGAAATCTAGAAAGAAGCTGTTTTCTGACAATCCCAACTTACCTGAAGTTTCAAAGCAAGGAAAGGAAAATCTGGAGAACATGCCAAAGTCACAGCTCAATAAGATAAATGTGCATGATCATAGTGGAGGAAATCCTAGTAATATTGCAAGTTGTGATGTTAAATATGCCTCATCAGTTAATAGTGATGAAGGGCATGGAACACAAGCCCCAGGGCTAGTAGCAAGACTCATGGGTTTGGATTCATTGCCAGCTTCTACAGTCTCTGAGCTCTCCCTCTCCTCTACTTCATTATATGGTTCCAACTCTCTTGGATCTTCTCATTCTCATGAGGGTGATCTTCATTTGATGGATGACTATTATCCTGTGGACTACATAAACATGCCACTTAAGGTGGATAAATCTTCTTTGGTTGTTATGGAATCAAAGGCTCAGAAAGTGGGAATAAAGAGATTTCAAAGTGAAATGTTGCCTCCAAAGTCAGCTAAACCTATTCCAGTTACTCACAATAAACTTGTGTCCTCTGTCACGAGCCATGGTTATATACCACCTAAGAATGCAGCTCATATGAAAGTGGACACTAAGATAAATGAGGCAAGTCCACTGCCATATATGAGGAATAGAAAGTCTTCAGTTGGGCCTTCATCTGTTCACTTAAAAAATCTTGATCTGAATGGCAAGCCTAGTGAGGAGAGCAATGATTTGTATAAATCCACTTCAACTTTCAAGGGTTCAAGAGATCCAGTAAACAATGGATCTCGCCATATAGTAAGTAAGGGAAAATCTGTTTCACTTCCAACTCTGTCCGAAGAAAACAACTGCAGAAAGAAGTTATCCACGAGCCAGAAGAAAACAACTGCAGATCAGGCCAGGGTCATGCAGCGCAAGGCTTGTACAGGGAGCACTAGCAATGTGCTTGTTCAAAATAATCAAAAGCAGATTTGTGTAACCAACAAAGGTAATTCAACTTCAAAAATGGACTCCAATAAACCAACTCGGACTTGGTCCTCAGAAAGTTCTACGGGATCAAAGAAGTCAACAAACAATGGTGCTGTAAATGCTAACATTGAGCCCAAGAGGTCAAGAACAACGGTAACTGGTACTCAAAAGGAGTTTCCAGTATCCAAAAGAAAGATCATTGCAGAAAAGAAAAGGTATAACAGTAGGGATGTTCAGAATGAGGCAAGAAGTTTTGATAATGCAGCTAAAGTTTTTGATAGCATGTCCATCAAATGCTTTGTTACAACTGATGGAAGTATTGACCAGGATGCATTTAACATGAAAGAAAGCAAGGATGTGGTTTCATTTACGTTTACATCTCCCTTGAGGAGAAGCATGCCTGAGTCACAGTCCTGTACTGAGCAATTGATGGAAACAAAGAACGGAATTGATGTTAATTCTCTTGATCATAGTGATAAACTTTATCCGAAAGAATTATCATTATCTCCTCCTAGGTTAGATATAATAGATGGTAATGATTTGAGTTCCCTTTTGGACAAAAAGCTGCAAGAATTGACTTTTAGAATTAACTCACCTCAATGTACCTTGGCAACAGAAGGGTCACCTTCTGGTTTAAGATCTAGTTTGGAAGACAAGTTCCACAGTTTGGTATGCGCCACAGCAAGGGAACATGACACAAGCTTTCATCCTAACCTTCTCAGTAATGAATTGGACAACATGCATGATAATGGTTGTTCTTCAAGTCATAATTCGGCGCTAAACATATATCAACAACATAAGACATCAGAACCAATGGAAAGGCCTAGCTGTAGCAGCAGTGGTGAAAGTGGAAATGAACTAGGTTCTCCGCGTTCAAGAGCTGTTACAGATTTTGATAATCCTTTTGTCAATGAAAGTTGCTTGGATTGTGAAGATAGTCGTACATATGGTAGCACTGTGTATTGTTCCATGCAAGATGAAGAAGTGTCTAATTCTTCTCCAATAAATGAATATGTATCACTTGAAAACGAGGTGTATGAGAAAAGCTCTTCCACAGCGCGCCAGGGAAACACGACCATCGAAGAATTAACTAGAATGTCAATACTTGTTGATTTCACAAGATCAACATGGAACATAGAGCTTGAATATGTAAAGGATATACTAACCAATGCTGAGTTGATGGCAGAAGAATTTGTTGTGGGTCAAACAGATAAAATCATAATGCCAAATCTGTTTGATGTGTTGGAGAACCATAGCAATGAGACAGAAAACTACAATAAAGAGTACTCTAAGCTTGAGAGGAAGGTTTTATTTGACACTATATGTGAGTGCCTAGAATTAAGATGTAGGAAAGCTTTTGTTGGGAGCTGCAAAAAATGGCCTATATGGATGGCATCAGTTAAGAGGACGAACCGGTTGGCCGAAGAATTGTACAAGGAAATGGTTGGCTTTAAAAGCATGGAAGAAGAGACAATGGTGGATGAAATTGTTAGCAAGGACATGAACACTGGTTTGGGTACATGGCTTGACTTTGACATTGAAGCCTTCCAAGAGGGTTTAGATGTTGAGCTTCACATAGTAACCTATTTGATCAATGAATTAGTTGCTGATTTGTTGTATGTTTAA 2622 0.3909 MEIEKKRSKGSFLSFFDWNVKSRKKLFSDNPNLPEVSKQGKENLENMPKSQLNKINVHDHSGGNPSNIASCDVKYASSVNSDEGHGTQAPGLVARLMGLDSLPASTVSELSLSSTSLYGSNSLGSSHSHEGDLHLMDDYYPVDYINMPLKVDKSSLVVMESKAQKVGIKRFQSEMLPPKSAKPIPVTHNKLVSSVTSHGYIPPKNAAHMKVDTKINEASPLPYMRNRKSSVGPSSVHLKNLDLNGKPSEESNDLYKSTSTFKGSRDPVNNGSRHIVSKGKSVSLPTLSEENNCRKKLSTSQKKTTADQARVMQRKACTGSTSNVLVQNNQKQICVTNKGNSTSKMDSNKPTRTWSSESSTGSKKSTNNGAVNANIEPKRSRTTVTGTQKEFPVSKRKIIAEKKRYNSRDVQNEARSFDNAAKVFDSMSIKCFVTTDGSIDQDAFNMKESKDVVSFTFTSPLRRSMPESQSCTEQLMETKNGIDVNSLDHSDKLYPKELSLSPPRLDIIDGNDLSSLLDKKLQELTFRINSPQCTLATEGSPSGLRSSLEDKFHSLVCATAREHDTSFHPNLLSNELDNMHDNGCSSSHNSALNIYQQHKTSEPMERPSCSSSGESGNELGSPRSRAVTDFDNPFVNESCLDCEDSRTYGSTVYCSMQDEEVSNSSPINEYVSLENEVYEKSSSTARQGNTTIEELTRMSILVDFTRSTWNIELEYVKDILTNAELMAEEFVVGQTDKIIMPNLFDVLENHSNETENYNKEYSKLERKVLFDTICECLELRCRKAFVGSCKKWPIWMASVKRTNRLAEELYKEMVGFKSMEEETMVDEIVSKDMNTGLGTWLDFDIEAFQEGLDVELHIVTYLINELVADLLYV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0622 873 MobiDBLite consensus disorder prediction 598 622 - -
Lal13g0622 873 Coils Coil 747 767 - -
Lal13g0622 873 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 244 873 - -
Lal13g0622 873 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 244 - -
Lal13g0622 873 PANTHER DUF4378 DOMAIN PROTEIN 1 244 - -
Lal13g0622 873 PANTHER DUF4378 DOMAIN PROTEIN 244 873 - -
Lal13g0622 873 MobiDBLite consensus disorder prediction 223 283 - -
Lal13g0622 873 MobiDBLite consensus disorder prediction 245 283 - -
Lal13g0622 873 Pfam Domain of unknown function (DUF4378) 712 865 IPR025486 -
Lal13g0622 873 MobiDBLite consensus disorder prediction 336 389 - -
Lal13g0622 873 MobiDBLite consensus disorder prediction 598 626 - -
Lal13g0622 873 Pfam DUF761-associated sequence motif 77 108 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0622 Lal-Chr13 4044514 4049407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0622 3 871 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 29.271 8.76e-80 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0622 - - gmx:100797988 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0622 13 4044514 4049407 Lal13g0622 13 4044514 4049407 ECH
Lal3g1433 3 20266022 20270789 Lal13g0622 13 4044514 4049407 PCT
Lal5g0171 5 1483162 1487751 Lal13g0622 13 4044514 4049407 PCT
Lal18g0374 18 3202287 3207613 Lal13g0622 13 4044514 4049407 PCT
Lal13g0622 13 4044514 4049407 Lal3g1433 3 20266022 20270789 PCT
Lal13g0622 13 4044514 4049407 Lal5g0171 5 1483162 1487751 PCT
Lal13g0622 13 4044514 4049407 Lal18g0374 18 3202287 3207613 PCT