Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0612 ATGAATTTCGAGGGACTTTTAAACAACTTACAGGATTGGGAAGTTTCTCGTGAGGGCAAAACATCACAAATGAAACAGTCTCATAAGGAAAATAAGGCATCTGGAGGAGATACAATTTCTTTTGATCAAGCAGGAAGTTATTCAGGAGTATCGTATGGTCTCTCGAGAAATAACGATCTTCATATGCGCAGTTTTGTTCATGAAGATTTTCCCGATGCTGTGTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCCATCGACTGCTATTCAAGAAGCATTGCCTTGTCACCTACGGCTGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAAAAGGTTCCAGAAGGCTGAGGATGACTGTACAGAGGCCTTAAACCTCGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCAAGAAAAGAGCTTGGGAAAATTAAAGGATCCATGGATGATGCTGAATTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCCGATGCCAAGTCTTTGTATGAGAAGGAAATTGTTCAAATAGCATCTGGAGCTCTGAGAAGCACTGTACAGGGAAGTAAAAAGGTGGGAAAGTCAGAGCCAAACGTTAATGGAGGGACCATTTCACATGGTACTCAAAAGATAGGGCCAACTGAAGTTTATCCTCAGACAAAGGGTAATGAGTCTTCTAAAGTGTCACTCTTAATGGAGGAGGTAGATAGCAAGGTTAAAAAAGCCAGTAACTTAAATCAAGGTCAAGAAGGAGATAGTTCTAAGAGATATCAGAAAATTAGTAAGCCAGAAACTAAAGCTTCTATTCAAGATCTTGCTTTTCGTGCGGCTTCTCGAGCCATAGCTGAAGCTTCAAAGAATATCATACCACCTACTACAGCTTATCAGTTTGAGGCATCTTGGAGAGGTTTTTCAGGTGATCGTGCTCTGCAGACTCGTTTATTAAAGGCCATATCTCCTCATGAATTACCAAAAATATTCAGAAATGCCTTATCTTCTGCCCTGCTGATTGACATCATCAAATGTGTTGCATCCTTTTTCATTGAAGACGTGGGTTTGGGTATCAGTTATTTGGAGTATTTGGCCAAGGTACCGAGGTTCGACATGATTGTAATGTGTCTTTCTTCAACAGATAAGGATGTCTTATGCAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAATCCCAATTGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAATTCAGCCTTGGACAGTAA 1296 0.4074 MNFEGLLNNLQDWEVSREGKTSQMKQSHKENKASGGDTISFDQAGSYSGVSYGLSRNNDLHMRSFVHEDFPDAVSEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLKRFQKAEDDCTEALNLDDRYIKAYSRRATARKELGKIKGSMDDAEFALRLEPNNQEIKKQYADAKSLYEKEIVQIASGALRSTVQGSKKVGKSEPNVNGGTISHGTQKIGPTEVYPQTKGNESSKVSLLMEEVDSKVKKASNLNQGQEGDSSKRYQKISKPETKASIQDLAFRAASRAIAEASKNIIPPTTAYQFEASWRGFSGDRALQTRLLKAISPHELPKIFRNALSSALLIDIIKCVASFFIEDVGLGISYLEYLAKVPRFDMIVMCLSSTDKDVLCKIWDEVFCSEAIPIEYAEILDNLRSKFSLGQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0612 431 MobiDBLite consensus disorder prediction 17 40 - -
Lal13g0612 431 SMART tpr_5 73 106 IPR019734 GO:0005515
Lal13g0612 431 SMART tpr_5 140 173 IPR019734 GO:0005515
Lal13g0612 431 SMART tpr_5 107 139 IPR019734 GO:0005515
Lal13g0612 431 Pfam Potential Monad-binding region of RPAP3 307 396 IPR025986 -
Lal13g0612 431 ProSiteProfiles TPR repeat profile. 73 106 IPR019734 GO:0005515
Lal13g0612 431 Pfam Tetratricopeptide repeat 106 136 IPR001440 GO:0005515
Lal13g0612 431 Pfam Tetratricopeptide repeat 77 105 IPR001440 GO:0005515
Lal13g0612 431 MobiDBLite consensus disorder prediction 257 277 - -
Lal13g0612 431 PANTHER OS05G0129900 PROTEIN 1 430 - -
Lal13g0612 431 MobiDBLite consensus disorder prediction 18 32 - -
Lal13g0612 431 SUPERFAMILY TPR-like 71 186 IPR011990 GO:0005515
Lal13g0612 431 MobiDBLite consensus disorder prediction 205 241 - -
Lal13g0612 431 Gene3D Tetratricopeptide repeat domain 62 171 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0612 Lal-Chr13 3981430 3987906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0612 77 143 U-box Gene Family AT3G07370 44.118 1.00e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0612 K23002 - gmx:100784528 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0612 13 3981430 3987906 Lal13g0612 13 3981430 3987906 ECH