Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0609 ATGGAACTGCTTTCTAGAGCAATCCTTCTCCATATTCTTCTGTTTGTTAGCTCTTCTTTCTGGGCTAATATAGTTGCTACATCTTGTGAGGGCAACAAAGTTATAAGTACCATTGTTGTTGATCAATCTGGGAAAACAAAATTTAAAACAGTTCAATCAGCCATTGATTCAATAAATGAAAACAATAATCAATGGGTGAAAATTCAAATAAATGCTGGCACATACAAAGAGAAGGTCCAAATTCCTTATACCAAGCCATGCATATATTTGGAAGGTAGAAGTAGAAGTAATACCATTATTACATACAATGCCCACAAACAAACAGATGAAAGTGCCACTTTTTCTTCATTCCCAGATAACGTTATTGCACGAAGCATTACTTTTCATAACTCTTATAATATTAATGGGAAAACATTCAGTTCGCAAAATGGAACAATTGTATTAAAACCAGGGCAAGTTGTCCCAGCGCTTGCAGCAAGAATATATGGAGACAAATCTGCTTTTTATGATTGCAACTTCATTGGTTTTCAAGATACATTGTGGGATGTACAAGGTCGTCATTACTTCAAAGACTGCAGAATTGAAGGATCTGTTGACTTCATCTTTGGTAATGGTCAATCCTACTACCAGAATTGTGTGCTCAATGCACTTTCCTCGGGTTTCGTGACAGCCCAAGGACGCTGTAAGGAGGAGGATCCAAGTGGTTTTGTATTCAGAGGAGGTTCTGTGAATGCAAGGGCAAAAACATTGTTAGGAAGAGCTTATGGAAAATATTCTAGAGTCATATTTCATGGAACACATTTTAGTCCAAAGATTCAACCAGAAGGATGGAGTTCTTGGCAATCAAATTCTGGGTCTGGCACTACGTACATTGAAGCTGATTGTGAAGGGCCAGGGGCTGATACTTCGAAGCGTGTCCCTTGGTCGAAGAAGGTCAGTGGTTCAAAAATGGACAAATTTTCGATATCATCTTTCATAAACCAAGATGGCTGGCTTCAAAAATTACCCGTCAAATGGGCATAG 1023 0.3842 MELLSRAILLHILLFVSSSFWANIVATSCEGNKVISTIVVDQSGKTKFKTVQSAIDSINENNNQWVKIQINAGTYKEKVQIPYTKPCIYLEGRSRSNTIITYNAHKQTDESATFSSFPDNVIARSITFHNSYNINGKTFSSQNGTIVLKPGQVVPALAARIYGDKSAFYDCNFIGFQDTLWDVQGRHYFKDCRIEGSVDFIFGNGQSYYQNCVLNALSSGFVTAQGRCKEEDPSGFVFRGGSVNARAKTLLGRAYGKYSRVIFHGTHFSPKIQPEGWSSWQSNSGSGTTYIEADCEGPGADTSKRVPWSKKVSGSKMDKFSISSFINQDGWLQKLPVKWA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0609 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 337 - -
Lal13g0609 340 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Lal13g0609 340 PANTHER PECTINESTERASE 2 337 - -
Lal13g0609 340 Pfam Pectinesterase 38 328 IPR000070 GO:0030599|GO:0042545
Lal13g0609 340 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lal13g0609 340 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
Lal13g0609 340 Gene3D - 31 340 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0609 Lal-Chr13 3960776 3962740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0609 32 282 Carbohydrate Esterase AT2G19150 44.402 1.67e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0609 - - lang:109353850 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0609 13 3960776 3962740 Lal13g0609 13 3960776 3962740 ECH
Lal13g0609 13 3960776 3962740 Lal24g0484 24 3404252 3405994 LSH