Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0607 ATGGCTTCTTCTTCTTCTTCTAAAGAACCAAACATAGAACATTCCACTAATTCACACACCACTTTACACCATTCCAACCACACCAAAATCACACCAAATTCCCCTAACCTAATCCCATGGAAATCCCAATTTCACCAACAGATCTATGCCTCCAACCTCGTCCAAGCCCTCCGCCGTACTCCTCCTTCCCCCGCCGCCCGTCAAGTCCGCGACACCGCTGACCGACTCCTCGCACGTACCGCCAAGGGCACAACACGCTGGAGCCGCGCAATTCTCGCTTCTCAGCGTTGGAACCTTCATATGAATAAACTAAAGAAGGTGAAGAAGGCTTCGAATGGAATGATGAAAACGCGGGTTACCGGAGGAAACGGGAAAATGAAGAGGAGGTTACCGGCTGTGAAGGAGAAAGCGCGAGTTCTCAGCCGGTTGGTTCCAGGTTGCAAGAAATTGGAGTTCCAGAAGCTTCTAGAAGAAACTTCTGATTATATTTCGGCGTTGGAGATGCAAGTAAGAGCCATGACGGATCTCACTCAGTTACTGGCTGGTCGAATGGTGAGTTGA 561 0.4955 MASSSSSKEPNIEHSTNSHTTLHHSNHTKITPNSPNLIPWKSQFHQQIYASNLVQALRRTPPSPAARQVRDTADRLLARTAKGTTRWSRAILASQRWNLHMNKLKKVKKASNGMMKTRVTGGNGKMKRRLPAVKEKARVLSRLVPGCKKLEFQKLLEETSDYISALEMQVRAMTDLTQLLAGRMVS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0607 186 PANTHER TRANSCRIPTION FACTOR BHLH150 24 182 - -
Lal13g0607 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 182 IPR036638 GO:0046983
Lal13g0607 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Lal13g0607 186 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 24 182 IPR044660 GO:0006355
Lal13g0607 186 CDD bHLH_AtIBH1_like 125 177 IPR044549 GO:0006355
Lal13g0607 186 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0607 Lal-Chr13 3946203 3946763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0607 4 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 40.625 2.00e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0607 - - aprc:113873135 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0607 13 3946203 3946763 Lal13g0607 13 3946203 3946763 ECH
Lal13g0607 13 3946203 3946763 Lal24g0482 24 3379674 3381344 LSH
Lal5g0176 5 1535244 1535798 Lal13g0607 13 3946203 3946763 PCT
Lal13g0607 13 3946203 3946763 Lal5g0176 5 1535244 1535798 PCT