Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0603 ATGGCCCCTAAATCCAAAGCCGCGAAAACCTCCGCCGCTTCATCCCCGGCCACAGCCCCCTTCAACGCAGGTTCTGCTGTGGAAATCAGCCCCGACGACCACGGTTTCCGCGGTTCTCTTTTCACCGGAAAGATCATCCGCCGCCTCGCCAACGACAGGGTCTTGATCGAGTACGACAACCTCATGGCCGACGAGAGCGGTTCGAAGCGATTGAGAGAGAACCTAAAACTTCACCAGCTCCGGCCGATTCCCCCAACGGAGACATGTCGGGAATTCAAGTTCGGCGACGAGGTTGACGCGTACCATAATGATGGGTGGTGGGAGGGTCACATTACGGAAGAGTGTGGGAATGAAAGGTTCGCTGTATATTTCAGAGTTTCGAGGGAGCAGATAGTGTTCCATAAAGAAGAACTCAGACTCCACCGTGAGTGGTTCAATGAGAACTGGGTTCCTCCATTCCCACAGAAGCAACAGGAAGAGAAAGTGTTGTTTACACCAACTGTGATGTCTGCTGAAACTGTGACATCAGATGTGAAGTCTACTGAAACTGTGACACCAAATGTGAAGCCTGTCGAAATTGTGATCGGGGAGGAGAGGTTTAGTGTAGGGACCCTAGTTGAGGTTAGCAGTGACAAAGAAGGTTTCCAAGGAGCTTGGTTTTGTGCCACTATTGTACAAGTGATAGGAAAGAGAAAGTTCCTTGTTGAGTATCAGAGCCTACTTGCTGATGATGATTCCCAGCTTTTGAGAGAGGAGGTTAATACCCAACACATTAGGCCACATCCGCCACAGACTGTTGTTGATGGTCATTTTAGTCTTCTTGAAGAAGTCGATGTTTTTCACAACTATGGCTGGTGGGTTGGCATGGTTTCTAAAGTTCTTGACAACTCAGGGTATGTAGTTTACTTCAGGAACAACAGTGAAGAACTAGAGTTTCAGCACTCCCAGTTGAGGAAACACCAGGACTGGATTGGTGGCAAATGGATCATGGCTTCAAAGGTATGGCCCCATGATTGTATGGTACAACAATCAAGCCTTTATCACACTAGGTCTTATAGTCGTGTGGTAAAGCTTCCCCTTAACCTTGGGTGTAGGGTTTATCCGCCTCTTGCTAAACTTTACACTCCATATACTCCCTCTTACTTCAACATATACGAAATCCATGTGCTTCTAAAGCATGTCTCCATATCTCTAACTTGCCATTTAATTCTTCTCTCGAGACCAATGTATATAAGTAGAGGCTCAATGTTGACCTTTGATGTAGTCCTTTGGCAATATGAAAATTTTATGAGACCTCGTCATGTATTTTCACTGGTCTTGGCCCCATCATACATATCTTTGTATTGCTTGAACATAGGTGTTGTTATTGTGAATGCTGCAGAGAGTGCAAGCGATAGAAGAAAAAAACAGTTTCAGTCCAGGCAAGCTCTGCAGTTCCTAGTAACTTTAATGTGA 1455 0.4598 MAPKSKAAKTSAASSPATAPFNAGSAVEISPDDHGFRGSLFTGKIIRRLANDRVLIEYDNLMADESGSKRLRENLKLHQLRPIPPTETCREFKFGDEVDAYHNDGWWEGHITEECGNERFAVYFRVSREQIVFHKEELRLHREWFNENWVPPFPQKQQEEKVLFTPTVMSAETVTSDVKSTETVTPNVKPVEIVIGEERFSVGTLVEVSSDKEGFQGAWFCATIVQVIGKRKFLVEYQSLLADDDSQLLREEVNTQHIRPHPPQTVVDGHFSLLEEVDVFHNYGWWVGMVSKVLDNSGYVVYFRNNSEELEFQHSQLRKHQDWIGGKWIMASKVWPHDCMVQQSSLYHTRSYSRVVKLPLNLGCRVYPPLAKLYTPYTPSYFNIYEIHVLLKHVSISLTCHLILLSRPMYISRGSMLTFDVVLWQYENFMRPRHVFSLVLAPSYISLYCLNIGVVIVNAAESASDRRKKQFQSRQALQFLVTLM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0603 484 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 17 163 - -
Lal13g0603 484 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 197 334 - -
Lal13g0603 484 MobiDBLite consensus disorder prediction 1 22 - -
Lal13g0603 484 Gene3D - 195 271 - -
Lal13g0603 484 Pfam Agenet domain 203 263 IPR008395 -
Lal13g0603 484 Pfam Agenet domain 24 85 IPR008395 -
Lal13g0603 484 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 17 163 - -
Lal13g0603 484 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 197 334 - -
Lal13g0603 484 SMART agenet_At_2 90 146 IPR014002 -
Lal13g0603 484 SMART agenet_At_2 269 325 IPR014002 -
Lal13g0603 484 SMART agenet_At_2 19 88 IPR014002 -
Lal13g0603 484 SMART agenet_At_2 198 266 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0603 Lal-Chr13 3922223 3928265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0603 212 323 PHD Transcription Factor Family AT5G58610 28.030 2.94e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0603 - - lang:109346228 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0570 12 4074433 4077013 Lal13g0603 13 3922223 3928265 ECH
Lal13g0603 13 3922223 3928265 Lal13g0603 13 3922223 3928265 ECH
Lal12g0570 12 4074433 4077013 Lal13g0603 13 3922223 3928265 LSH
Lal13g0603 13 3922223 3928265 Lal24g0476 24 3353255 3356662 LSH