Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0599 ATGGCACCGAAAAAGTATTACTGCGATTATTGCGATAAGCAATTCCAAGACACTCCCTCTGATCGTAAACGTCATATTCGTGGTATTATGCATCAACAAGCCAAAGCACGTTGGTACGATTCCTTCAATATTCAACCACCTCTTTCAAATGCTCCTATCTGCATTCATTTCCTCAACACGGGATTTTGTCGGTATGGAGATTCTTGCAAATACACTCACCCCAGTCCCAACAACACTATAATAACCTCACAAGTCCAACAACAAGGGAGTGTGGTGCGAGATAGAATGGGAGTGTCATGGGGCAATCTACCTCCGTCGCTGTACCCTCCACCTGAGGCTGGATATCCATCACTTCCCTTTATTGACTGGGGTTAG 375 0.4507 MAPKKYYCDYCDKQFQDTPSDRKRHIRGIMHQQAKARWYDSFNIQPPLSNAPICIHFLNTGFCRYGDSCKYTHPSPNNTIITSQVQQQGSVVRDRMGVSWGNLPPSLYPPPEAGYPSLPFIDWG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0599 124 Gene3D Classic Zinc Finger 4 46 - -
Lal13g0599 124 SUPERFAMILY beta-beta-alpha zinc fingers 4 43 IPR036236 -
Lal13g0599 124 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Lal13g0599 124 PANTHER NUCLEASE-RELATED 1 124 - -
Lal13g0599 124 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lal13g0599 124 Gene3D - 47 96 - -
Lal13g0599 124 SUPERFAMILY CCCH zinc finger 48 76 IPR036855 GO:0046872
Lal13g0599 124 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 74 IPR000571 GO:0046872
Lal13g0599 124 SMART c3hfinal6 48 75 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0599 49 74 C3H Transcription Factor Family AT1G04990 61.538 8.01e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal13g0599 zf-U1 5.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0599 K13152 - gmx:100527203 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0599 13 3903994 3904576 Lal13g0599 13 3903994 3904576 ECH