Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0589 ATGACTAGGAAGAAGGTGAAGCTTGCGTATATCAGTGAAGATAATGCAAGGAAAGCAACGTTTAAGAAAAGGAAGAAGGGTATCATGAAGAAGGTGAGTGAACTCACAATTCTTTGTGGAATTGATGCTTGTGCTATAATTTTCAACCCTTGTGATTCTCAGGTAGAGGTTTGGCCAGACCCAAAAGGAGCGAAGCAGATTATTAAGAGGTACCAAAAAACTTCAGTGATAGATGAAACAAAGAACATGAATCAGGAGAGTTTTGTTATGCAAACCATTTCTAAAGCCATGTATAAGCTCGATAAGCAGCGCAAGGAAAATCGTGAGAAAGAAATGACCGTAGCTATGTTTGATTATATGGAATCCAGAAAGCTGCCAGAAAATATGACCATCACAGATCTAAAAAATATGGACAAGTTGATTCAGGAGTATATTAGTGACATCAGAAACAAGATTATTGAATAA 465 0.3699 MTRKKVKLAYISEDNARKATFKKRKKGIMKKVSELTILCGIDACAIIFNPCDSQVEVWPDPKGAKQIIKRYQKTSVIDETKNMNQESFVMQTISKAMYKLDKQRKENREKEMTVAMFDYMESRKLPENMTITDLKNMDKLIQEYISDIRNKIIE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0589 154 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Lal13g0589 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal13g0589 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal13g0589 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal13g0589 154 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Lal13g0589 154 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Lal13g0589 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal13g0589 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal13g0589 154 PANTHER MADS BOX PROTEIN 2 153 - -
Lal13g0589 154 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal13g0589 154 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0589 Lal-Chr13 3848045 3848509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0589 1 152 Type I MADS-box Gene Family AT5G48670 48.366 6.21e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g0589 SRF-TF 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0589 - - gmx:100792290 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0589 13 3848045 3848509 Lal24g0466 24 3288192 3288662 LSH