Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0588 ATGACTAGGAAGAAGGTGACACTAGCATACATCACCGATCAGAGTGCAAGGAAAGCAACATTCAAGAAAAGGCAGAAGAGCATCATGAAGAAGGTGTGTGAGCTCACCACTCTTTGTGGGATTCAGGCTTTTGCTATGATTTGGAATCCTTTTGACGCTCACACAGAGGTTTGGCCAGATCCAGAGGGTGTTAAGCAGCTGATTAAGAGGTATCAGGAGAGATCTGTGAAAGATGAAAGAAAGAACATGAACCAAGAGAGCTTCATCAGGCAAAGGATCACCAAGGCAAAGGACCAACTCAATAAGTTGCGTAAAGAAAACCGTGAGAAAGGGACAGCCCAAGCTATAATGCACTATATACAAACCAGAAAGCTGCCGGAAAACCCGACCATCACGGATCTGAAAGATATCGACACACTGGTTGAGAAATATCTGACAGACATCAACAATAAGATGGCTTCCCTCGGAAGCTGA 474 0.4451 MTRKKVTLAYITDQSARKATFKKRQKSIMKKVCELTTLCGIQAFAMIWNPFDAHTEVWPDPEGVKQLIKRYQERSVKDERKNMNQESFIRQRITKAKDQLNKLRKENREKGTAQAIMHYIQTRKLPENPTITDLKDIDTLVEKYLTDINNKMASLGS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0588 157 Coils Coil 86 113 - -
Lal13g0588 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal13g0588 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal13g0588 157 PANTHER MADS BOX PROTEIN 2 154 - -
Lal13g0588 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal13g0588 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal13g0588 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lal13g0588 157 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Lal13g0588 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Lal13g0588 157 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Lal13g0588 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0588 Lal-Chr13 3834682 3835155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0588 1 155 Type I MADS-box Gene Family AT5G48670 43.590 5.73e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g0588 SRF-TF 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0588 - - gmx:100792290 175.252