Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0585 ATGCCTCTATATGAGTTATACCAGTTGTCTAGAGATAAGGTTGATAAAGAGGTTAACAACACTAATTCAGTTGAACAATCTCAATCCTCCTTGCCTGAGAATGATTTCTTTGAAATGGTTTGGGAAAATGGTCAGATTTCAAGCCAGGGTCAGTGTAGAAAGAGCCCAACTTTTTGCAGGGGTTTTCCATCTCATTGCTTACCATCCCATAGTCTGAAAGGTGGAGATAAAGATGAAGCAGGACATGCTATGAATACAAGGTTGGGAAAGTTTCAGGACTTTGATTCTGGATTGAATGAAATCGCGATGTCGGTGCCACCACATGAAGTGAATTTGAGTCAAGATGGGGACATGATGCCTTGGTTGGATTACACAATGGATGGCTCTTTGCAACATTACTGTAGTTCTGATTTCTTAAATGAACTATCTGGTGTCACAGAAAATGACCTCCCTCAACCAAATAATTTTGCCCTTATGGATAGAAGAAGAAATGGTACTAATCAAGAATTTAAGGTCTCTCATAAAAATTCTGCAAGAAATGTTTCTGGTCCAGAAGAAGTGGACGTTTCTAAGGGTTCTTCAGCTAGAGAAGTTGATACTTCTGGGCCTAAAGTTAGCACCAGTCAGTTATACCCTCCATCATCACATCAATGTCAAACACCATTTGCATCTGTTAGATCCCAAGTATCAGATATAACTGAGAATAATACAAGTAATGCTACTGAGCATGCACCTCGTGGCGAAACAACTCAGATCGCGTCTTCCTCTAGTGATTTTTATAGCTTAAAGATGCAGAAGCAGGATCCTATTATGCCTACCAATGGTTCAAAGGTAATGAATTTCTCCCATTTTGCAAGGCCTACTGCTATTATGAGAACTAATATTCAGAACGTTGGCTTGAAGTCTGATTTGTCTTCAGGAAGACCAGATGGTAGGGGAGGTAAGAATAAAGGTGCAGCTACAACTAGCAGCAAACCTCCTGAATCAATAAGAGTTGATTCAAGTGGTGATTGTTCAAAGAAACCAATCATGCACCGCCAGCAGGTTATGGAGCAATCCAAGGCTGATTTGAAACGGTTGGAGCCAAAATCTCTTGAACAGAATGCTGTAGCTTCTAAACAGTTGGACCCTGTTTGCAAAGAGAACTCTATTAAGATTGATAAAACTTCCAGTCAAATTATTGCTGAAAGTGGCCTTGAAGAACAAACAATCGTTGAAAAAAGTATGGAGCCAGCAGTAGCCTCCACCTCCGTTTGCTCTGGCAATGATGTAGACAGAGTTTCAGATGAGCCAAAGCAAAATTTGAAGCGAAAAAGTAGAGCCGCTGAGGGCTCTGAGTGCCATAGTGAAAAGTTATCTTACTTGAAGGATGTTGCGGAAGAATCTGTGGGTCTTAAAAAGGCGGCTGCTGGACGAGGACGTACTGGTATTAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAACAAGGTGGATAAAGCTTCAATGCTAGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCATCCGATGATGATACCTCCAGGAATGCAGCACATGCACACGCCAAATGCGGCTCCCTTTTCACCTATAGGTGTTGGCATGCAAATGAGGATGGGCTATGGGATGGGTATGCTTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCACATGCCCCAAATACCAGGACTTCCCATGCCAATGCCACCATTATTTCCTTTTTTAAAAGGGCCTTTTGTGAACTCACGAACTCTGGGACAACATGCCGGGGAAACAGAAGGAGTTGTTGAAAGTGGGAATTCAGCTTCATCAGGCTTAAAAGATCCAATGCCGAATTTGGACCCACAAGTTAAGCAAAGTACTGGTGGCTATGACTCAACGAGTCAGATTCCTAACAAGTGTGTAGCAGCAACTGTTGGATTTGAACAGACAGCTTTGGTGCAAAATAGTGGTCAGGCCTCTGATGTTAATGACAATAGAGCTGTTAATCCTGGCAAAGAAGATAGCCCTGTGATTGGTTAA 2139 0.4203 MPLYELYQLSRDKVDKEVNNTNSVEQSQSSLPENDFFEMVWENGQISSQGQCRKSPTFCRGFPSHCLPSHSLKGGDKDEAGHAMNTRLGKFQDFDSGLNEIAMSVPPHEVNLSQDGDMMPWLDYTMDGSLQHYCSSDFLNELSGVTENDLPQPNNFALMDRRRNGTNQEFKVSHKNSARNVSGPEEVDVSKGSSAREVDTSGPKVSTSQLYPPSSHQCQTPFASVRSQVSDITENNTSNATEHAPRGETTQIASSSSDFYSLKMQKQDPIMPTNGSKVMNFSHFARPTAIMRTNIQNVGLKSDLSSGRPDGRGGKNKGAATTSSKPPESIRVDSSGDCSKKPIMHRQQVMEQSKADLKRLEPKSLEQNAVASKQLDPVCKENSIKIDKTSSQIIAESGLEEQTIVEKSMEPAVASTSVCSGNDVDRVSDEPKQNLKRKSRAAEGSECHSEKLSYLKDVAEESVGLKKAAAGRGRTGIKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMHPMMIPPGMQHMHTPNAAPFSPIGVGMQMRMGYGMGMLDMNGGSSRFPMIHMPQIPGLPMPMPPLFPFLKGPFVNSRTLGQHAGETEGVVESGNSASSGLKDPMPNLDPQVKQSTGGYDSTSQIPNKCVAATVGFEQTALVQNSGQASDVNDNRAVNPGKEDSPVIG 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0585 712 MobiDBLite consensus disorder prediction 415 444 - -
Lal13g0585 712 PANTHER TRANSCRIPTION FACTOR PIF3 1 669 IPR044273 GO:0003700|GO:0006355
Lal13g0585 712 MobiDBLite consensus disorder prediction 653 668 - -
Lal13g0585 712 MobiDBLite consensus disorder prediction 300 340 - -
Lal13g0585 712 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
Lal13g0585 712 MobiDBLite consensus disorder prediction 687 712 - -
Lal13g0585 712 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 543 IPR036638 GO:0046983
Lal13g0585 712 Gene3D - 477 539 IPR036638 GO:0046983
Lal13g0585 712 PANTHER TRANSCRIPTION FACTOR PIF3 1 669 - -
Lal13g0585 712 SMART finulus 487 536 IPR011598 GO:0046983
Lal13g0585 712 MobiDBLite consensus disorder prediction 634 668 - -
Lal13g0585 712 MobiDBLite consensus disorder prediction 194 256 - -
Lal13g0585 712 MobiDBLite consensus disorder prediction 425 444 - -
Lal13g0585 712 CDD bHLH_AtPIF_like 481 543 - -
Lal13g0585 712 MobiDBLite consensus disorder prediction 169 256 - -
Lal13g0585 712 Pfam Helix-loop-helix DNA-binding domain 485 531 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0585 Lal-Chr13 3821116 3825645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0585 1 625 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.750 8.94e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0585 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0585 K12126 - gmx:100794974 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0585 13 3821116 3825645 Lal13g0585 13 3821116 3825645 ECH
Lal12g0557 12 3990242 3995950 Lal13g0585 13 3821116 3825645 LSH