Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0583 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTGAGGAAAGGTCTTTGGTCTCCAGATGAAGATGAGAAGCTTTTGAATTATATAACCAAACATGGTCTTGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGTTTGCAGAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAATTTGATACTTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATAAAGAACCTATGGAACTCATGCCTCAAGAAGAAGCTCAGACAAAGAGGCATTGATCCAAACACTCACAAACCACTCTCAGAGGTTGAGAATGACAAGGACAAGCCATCCATAGCAGACAAAAAATTAGCTTCAGTGGGATCCAATGAAGTGTATAGTTTTGTTGAGCCAAAAAAACCCAACCAAGGTTCCATTCCTCCTGAGAGATATAACCCACTTGAATTCTCTACAAGTTCCAAGATCAACAACAAAAGTAGCAACAATAACTTGACCAGCAGCACCACATCTACACAGGAATTATTACTAGACTCAATCAATAGTTGCAGACCATCTGATATGGTAGGAAATTATTTCTCACTCCAACACTTGAACTATGGACCAAACATGAACAACACCCCTATTTACATGTCAGACCTTAATTCTGGCATAACTTCTACTATACTCCATAATTCTGCCTCAACCTCATCAATTTTACAAACTCCAACACATGTAAAGCCTACTGTTACTCTCCACTCTAATAACAACTTCAACAACAATCCTTCTATATCCTCTGGTGACATTGATGGGAACAGAAGCACTATGCAGTTACAAAACAACACAAACTTCCTTCGCAATAATAGCACTATGACATGGGGGATGGAAGAGTCTGTGAAGGCTGATAAAGATGCTATATCTTTACAAGGAGAAGAACAAGAAGAGATAAAGTGGTCTGAATATCTTAACACTCCATTCCTTCTTGGAAACACAGTGCAGAATCAAACCTCTCAATCTATCTACAGTGATGTGATTAAACCAGAAAGTGGCTTCATAACAGAAGATTCAAGTACTGGTTGGCAACAACATAACCAGCAGCACCAACCAGCTTTTCAACTTTCAGATATATATAATAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTCTAG 1242 0.4026 MGRHSCCYKQKLRKGLWSPDEDEKLLNYITKHGLGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLILELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDKPSIADKKLASVGSNEVYSFVEPKKPNQGSIPPERYNPLEFSTSSKINNKSSNNNLTSSTTSTQELLLDSINSCRPSDMVGNYFSLQHLNYGPNMNNTPIYMSDLNSGITSTILHNSASTSSILQTPTHVKPTVTLHSNNNFNNNPSISSGDIDGNRSTMQLQNNTNFLRNNSTMTWGMEESVKADKDAISLQGEEQEEIKWSEYLNTPFLLGNTVQNQTSQSIYSDVIKPESGFITEDSSTGWQQHNQQHQPAFQLSDIYNKDLQRFSVAFGQTL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0583 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal13g0583 413 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal13g0583 413 MobiDBLite consensus disorder prediction 119 142 - -
Lal13g0583 413 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g0583 413 PANTHER HOMEODOMAIN-RELATED 1 406 - -
Lal13g0583 413 CDD SANT 17 61 IPR001005 -
Lal13g0583 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal13g0583 413 SMART sant 66 114 IPR001005 -
Lal13g0583 413 SMART sant 13 63 IPR001005 -
Lal13g0583 413 MobiDBLite consensus disorder prediction 156 195 - -
Lal13g0583 413 Gene3D - 68 145 - -
Lal13g0583 413 MobiDBLite consensus disorder prediction 174 195 - -
Lal13g0583 413 Gene3D - 11 67 - -
Lal13g0583 413 CDD SANT 69 109 IPR001005 -
Lal13g0583 413 PANTHER MYB DOMAIN PROTEIN 55 1 406 - -
Lal13g0583 413 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g0583 413 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal13g0583 413 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0583 Lal-Chr13 3805334 3807497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0583 1 413 MYB Transcription Factor Family AT1G09540 49.528 8.59e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0583 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0583 K09422 - gmx:100788976 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0555 12 3975096 3977088 Lal13g0583 13 3805334 3807497 ECH
Lal12g0547 12 3916110 3918394 Lal13g0583 13 3805334 3807497 ECH
Lal13g0566 13 3700200 3702576 Lal13g0583 13 3805334 3807497 ECH
Lal24g0462 24 3261604 3263584 Lal13g0583 13 3805334 3807497 ECH
Lal3g1419 3 20090912 20092796 Lal13g0583 13 3805334 3807497 ECH
Lal13g0583 13 3805334 3807497 Lal13g0583 13 3805334 3807497 ECH
Lal12g0555 12 3975096 3977088 Lal13g0583 13 3805334 3807497 LSH
Lal13g0583 13 3805334 3807497 Lal24g0462 24 3261604 3263584 LSH
Lal3g1419 3 20090912 20092796 Lal13g0583 13 3805334 3807497 PCT
Lal13g0583 13 3805334 3807497 Lal3g1419 3 20090912 20092796 PCT