Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0580 ATGGGTATTAAGGGTTTAACGAAGCTTTTGGCTGACAATGCTCCAAAATCAATGAAGGAGAACAAATTCGAAAGCTACTTTGGACGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTAGTGGGAAGGAGTGGAACTAAGATGCTCACCAATGAAGCTGGTGAAGTTACCAGTCATTTGCATGGGATGTTGTTGCGGACAATAAGACTTCTAGAAGCTGGGATCAAGCCAGTATATGTTTTTGATGGTATGCCACCCGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCAAAGAGGGCTGAGGCTACTGAGTGTTTGACAGAAGCCATAAAGGCTGGCAATAAGGAAGACATTGAGAAATTCAGTAAACGGACGGTGAAGGTTACAAAGCAGCATAATGAAGACTGCAAAAGACTTCTAAGACTCATGGGAATGCCAGTTGTTGAGGCACCCTCAGAAGCAGAGGCACAATGCGCTGCACTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGATATGGATTCCTTAACGTTTGGAGCTCCAAAATTTCTTCGCCATTTAATGGACCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGAAATTGAAAAGATTTTGGAGGGGCTAAATATGACAATGGACCAATTTATTGACTTTTGCATTCTTTCTGGATGTGACTACTGTGAAAGCATTCGAGGGATTGGGGGAATTACTGCTTTGAAGCTCATACGTCAACATGGCTCTATCGAGAATGTACTGGACAAGATAAACAAAGAGAGGTATCAGATACCAGATGATTGGTTGTATCGGGAAGCTCGATGCCTTTTTAAAGAGCCAATAGTCTCAAGTGAAGAAGAGGAACTTAATCTGAAGTGGTCTCCTCCAGATGAAGAAGGGTTAAAAACATTTCTGATAAATGAGAACGGGTTCAACAATGACAGGGTGACAAAGGCAATAGAAAAAATTAAAGCAGCGAAGAACAAGTCATCACAAGACCGGCAAGTGATTCTTAACTCACTGAACATGAGTGTTAAAACCTTCTGTTATTGTCCTAACTGGCTCCTTCTCATTCCCTTTTCTGTAAATAACAGATTGGAACCATTTTTTAAGCCAACAGTAAATCCATCTGTGTCTATGAAAGGGAAGGAAACCAAATGCATGCTGAGATCTTTTAAACCGGCAACTGAACATAAGATGTTTTCTTTGCAACCCATTAACTGGTCAAGGCCCATGGTTTTAGGCAAGTTGAGCTTGCCAATGTATAATCTGGGTTCCACCTTCTCTGTGCTATTGTCTAGAGGTGTCTGCTTTGGTTTCTGA 1344 0.4152 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTKMLTNEAGEVTSHLHGMLLRTIRLLEAGIKPVYVFDGMPPDLKKQELAKRYSKRAEATECLTEAIKAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGMPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEIEKILEGLNMTMDQFIDFCILSGCDYCESIRGIGGITALKLIRQHGSIENVLDKINKERYQIPDDWLYREARCLFKEPIVSSEEEELNLKWSPPDEEGLKTFLINENGFNNDRVTKAIEKIKAAKNKSSQDRQVILNSLNMSVKTFCYCPNWLLLIPFSVNNRLEPFFKPTVNPSVSMKGKETKCMLRSFKPATEHKMFSLQPINWSRPMVLGKLSLPMYNLGSTFSVLLSRGVCFGF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0580 447 Hamap Flap endonuclease 1 [fen]. 1 353 IPR023426 GO:0016788
Lal13g0580 447 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lal13g0580 447 Gene3D - 10 221 - -
Lal13g0580 447 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 341 IPR036279 -
Lal13g0580 447 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lal13g0580 447 PANTHER FLAP ENDONUCLEASE 1 1 411 - -
Lal13g0580 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lal13g0580 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lal13g0580 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lal13g0580 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lal13g0580 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lal13g0580 447 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lal13g0580 447 CDD PIN_FEN1 4 332 - -
Lal13g0580 447 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Lal13g0580 447 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 411 IPR006084 -
Lal13g0580 447 SMART xpgn3 1 108 IPR006085 GO:0004518
Lal13g0580 447 SMART xpgineu 147 219 IPR006086 GO:0004518
Lal13g0580 447 Gene3D - 222 286 - -
Lal13g0580 447 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lal13g0580 447 CDD H3TH_FEN1-Euk 222 289 - -
Lal13g0580 447 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0580 Lal-Chr13 3777906 3781645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0580 1 443 Core DNA Replication Machinery Family AT5G26680 70.203 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0580 K04799 - zju:107411672 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0580 13 3777906 3781645 Lal13g0580 13 3777906 3781645 ECH
Lal12g0554 12 3966438 3972408 Lal13g0580 13 3777906 3781645 LSH