Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0577 ATGTCTTCCTCAAGGCCTAGCCAATCGTCCACCAATTCAGGAAGACCAAGAAATAGTGCTAGGGTCATTGCTCAGACCACAGTAGATGCAAAACTCCATGCAAACTTTGAGGAGTCAGGTTGTTCCTTTGATTACTCCAGTTCAGTGCGCGTCTCTGGGACAGTGGGCGGAGACCATCAACCAAGGTCTGACAGAGTAACAACAGCTTACCTCCATCATATTCAGAAAGGCAAGCAGATCCAGCCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACCTGCAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTGACCATGATGAGTCATGCTGTCCCCAATGTTGTTGACCACCCTGCCCTTGGGATTGGCACTGACATAAGAACTATTTTCACTGCACCAAGTGCTTCTGCATTGCAAAAGGCACTAGGATTTGGAGAGGTTTCACTTCTTAACCCAATCCTAGTTCATTGCAAGACTTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGCAGTTTGATCATCGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTGGCTGCCAAAGCAATAACCCGTCTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGTGAGGTGATTGCTGAGATAGCAAAGCCAAGCCTAGAATCATATCTGGGTTTACACTATCCAGCCACCGATATTCCCCAGGCTTCACGCTTTTTGTTCATGAAGAACAAGGTCCGCATGATAGTAGATTGTCATGCAAGACATGTGAAGGTTCTTCAAGATGAGAAGCTCCCTATTGATTTGACTTTGTGTGGTTCAACTTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGCAAACATGGATTCCATTGCTTCCCTTGTTATGGCAGTAGTAGTCAATGACAACGATGAAGATGGGGATACCTCCGATGCTGTTCAGCCTCAGAAGAGAAAGAGACTCTGGGGTTTGGTAGTTTGCCATAACACTACTCCAAGGTTTGTTCCATTTCCTCTAAGATATGCATGTGAATTTCTGACTCAAGTATTTGCCATCCATGTGAACAAGGAAATAGAGTTAGAACTTCAGATTATTGAGAAGAATATACTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCACCCTTAGGTATTGTATCACAGAGCCCCAATATAATGGATCTAGTAAAGTGTGATGGGGCTGCTCTTTTTTATAAAAACAAGGTATGGAGATTAGGAGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTATGGCTTTCTGAGCACCATATGGATTCAACAGGTTTGAGTACAGATAGCTTGTTAGATGCAGGATTCCCAGGGGCTCTTTCTCTTGGTGATACTGTATGTGGAATGGCAGCCGTTAGAATAGCTTCAAAAGACACAGTTTTCTGGTTCCGGTCACACACTGCTTCAGAAATCCGTTGGGGTGGTGCAAAGCAAGAACCTGGTGAAAGGGATGATGGTAGGAAGATGCACCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAGCTAATACTTAGAAATGCATTCAGAGATACAGTGACTACACATATAAACACAAGTGCAATCGATACAAGACTAAGTGATTTGAGGATCGAAGGGATGCAGGAATTGGAAGCAGTGGCAAGTGAAATGGTTAGGTTAATTGAAACAGCTACAGTGCCTATTTTGGCAGTTGATATTAATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTAACAGGTCTTCCAGTTGGTGATGCTATTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAATTGATAGAGTCAAGAAGATGCTTGACATGGCACTGCAGGTTCTTGGGAAGGAAGGGATGGAGGGGTTGTGTGGGGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTTACATGGATTCTGGTCCTGTTAGCTTGGTAGTAAATGCTTGTGCAAGTAGGGATCTTCGAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAAAAGACTGTCATGGACAAATTCACTAAAATTGAAGGTGACTACAAGGCAATTGTGCAGAATCCCAACCCATTAATCCCCCCAATATTTGGCACAGATGAATTTGGTTGGTGTTGTGAGTGGAATCAAGCTATGACAAAGTTAACTGGGTGGAAGAGAGAAGAGGTCATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACTCAGAAGGCTTGCTGTCGTCTGAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTCAATGAAGCAATGACTGGTTCAGAAACAGCAAAGGTTGCTTTTGGTTTCATTGCTCGGAATGGGAAGTATGTAGATTGCCTTCTTTCAGTGAGTAAGAAATTTGACACAGACGGTGCAGTTACCGGGATATTCTGCTTCTTGCAGCTAGCCAGCCCAGAGCTGCAACGAGCATTACATATTCAACGCTTATCTGAGAAAACAGCCTTGAAGAGACTGAAATCTTTGAGTTATATTAAAAGGCAGATCAGGAACCCCTTAAGTGGGATTATGTTTACCAGGAAATTGCTTGAGGGTACTGAGTTGGGAACAGAACAAGTACAACTTCTGCACACTAGCGCTCAGTGCCAGCGCCAGCTTAGCAAAATTATTGAGGACTCAGATCTTGACAGCATCATTGACGGTTGTTTGGATCTTGAGATGGCCGAGTTCACTCTGCATGATGTATTGGCTGCCTCCCTTAGTCAAGTCATGCTAAAGTGTAATGCAAAGGGTATCCAAATAATCAATGATGTTGCAGAGCAGATCAGGATTGAAACCTTGTATGGTGATTGCCTTAGGCTTCAACAGGTCGTCGCCGACTTTTTAGTGATTTCCATCAATTTTACACCAAATGGGGGTCAAGTTGTTGTTGCAGCCTCTCTAACCAAACAACAGTTAGGGCAATCCGTCCACCTTGTTAACTTGGAGCTCAGCATAACACATGCTGGTAGTGGTGTGCCAGAATCATTGTTGAACCAAATGTTTGAAAATGGTGGGCAAGAATCAGAGGAGGGTATTAGCTTACTAATCAGTAGAAAGCTATTAAAGCTCATGAGTGGAGATGTGCGATATCTAAGAGAAGCAGACAAATCTTCTTTAATCCTATCTGTTGAACTTGCTGCAGCTCATAAGTTGAAACCTTAA 3408 0.4308 MSSSRPSQSSTNSGRPRNSARVIAQTTVDAKLHANFEESGCSFDYSSSVRVSGTVGGDHQPRSDRVTTAYLHHIQKGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMMSHAVPNVVDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPSLESYLGLHYPATDIPQASRFLFMKNKVRMIVDCHARHVKVLQDEKLPIDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDNDEDGDTSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVNKEIELELQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYKNKVWRLGVTPSESQIREIALWLSEHHMDSTGLSTDSLLDAGFPGALSLGDTVCGMAAVRIASKDTVFWFRSHTASEIRWGGAKQEPGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDTVTTHINTSAIDTRLSDLRIEGMQELEAVASEMVRLIETATVPILAVDINGLVNGWNTKIAELTGLPVGDAIGKHLLTLVEDSSIDRVKKMLDMALQVLGKEGMEGLCGEEEKNVQFEIKTHGSYMDSGPVSLVVNACASRDLRDNVVGVCFVAHDITAQKTVMDKFTKIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNQAMTKLTGWKREEVMDKMLLGEVFGTQKACCRLKNQEAFVNFGIVLNEAMTGSETAKVAFGFIARNGKYVDCLLSVSKKFDTDGAVTGIFCFLQLASPELQRALHIQRLSEKTALKRLKSLSYIKRQIRNPLSGIMFTRKLLEGTELGTEQVQLLHTSAQCQRQLSKIIEDSDLDSIIDGCLDLEMAEFTLHDVLAASLSQVMLKCNAKGIQIINDVAEQIRIETLYGDCLRLQQVVADFLVISINFTPNGGQVVVAASLTKQQLGQSVHLVNLELSITHAGSGVPESLLNQMFENGGQESEEGISLLISRKLLKLMSGDVRYLREADKSSLILSVELAAAHKLKP 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0577 1135 SMART HisKA_10 905 970 IPR003661 GO:0000155|GO:0007165
Lal13g0577 1135 TIGRFAM sensory_box: PAS domain S-box protein 624 750 IPR000014 -
Lal13g0577 1135 SMART gaf_1 218 411 IPR003018 GO:0005515
Lal13g0577 1135 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Lal13g0577 1135 PIRSF Phytochrome_conventional 1 1135 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lal13g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 775 881 IPR035965 -
Lal13g0577 1135 ProSiteProfiles PAS repeat profile. 617 685 IPR000014 -
Lal13g0577 1135 Pfam Phytochrome region 414 587 IPR013515 GO:0006355|GO:0009584
Lal13g0577 1135 Gene3D - 199 562 IPR029016 -
Lal13g0577 1135 Gene3D PAS domain 74 321 - -
Lal13g0577 1135 CDD PAS 772 883 IPR000014 -
Lal13g0577 1135 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 968 1119 IPR036890 -
Lal13g0577 1135 CDD HisKA 910 960 IPR003661 GO:0000155|GO:0007165
Lal13g0577 1135 Pfam GAF domain 218 401 IPR003018 GO:0005515
Lal13g0577 1135 ProSiteProfiles Histidine kinase domain profile. 912 1131 IPR005467 -
Lal13g0577 1135 Gene3D - 968 1130 IPR036890 -
Lal13g0577 1135 Gene3D PAS domain 611 760 - -
Lal13g0577 1135 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 723 740 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 PRINTS Phytochrome signature 743 763 IPR001294 GO:0006355|GO:0009584
Lal13g0577 1135 Pfam His Kinase A (phospho-acceptor) domain 910 964 IPR003661 GO:0000155|GO:0007165
Lal13g0577 1135 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g0577 1135 Gene3D - 406 579 IPR043150 -
Lal13g0577 1135 SUPERFAMILY GAF domain-like 198 398 - -
Lal13g0577 1135 SMART pas_2 760 829 IPR000014 -
Lal13g0577 1135 SMART pas_2 619 685 IPR000014 -
Lal13g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Lal13g0577 1135 CDD PAS 628 745 IPR000014 -
Lal13g0577 1135 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1018 1115 IPR003594 -
Lal13g0577 1135 ProSiteProfiles PAS repeat profile. 761 813 IPR000014 -
Lal13g0577 1135 PANTHER PHYTOCHROME A 1 1130 - -
Lal13g0577 1135 SMART HKATPase_4 1017 1129 IPR003594 -
Lal13g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 741 IPR035965 -
Lal13g0577 1135 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1130 - -
Lal13g0577 1135 Pfam PAS fold 761 883 IPR013767 GO:0006355
Lal13g0577 1135 Pfam PAS fold 620 745 IPR013767 GO:0006355
Lal13g0577 1135 Pfam PAS fold 69 185 IPR013654 GO:0006355
Lal13g0577 1135 SUPERFAMILY GAF domain-like 409 587 - -
Lal13g0577 1135 Gene3D PAS domain 774 886 - -
Lal13g0577 1135 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0577 Lal-Chr13 3756225 3762875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0577 1 1132 Histidine Kinase Gene Family AT1G09570 78.023 0.0 1858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0577 K12120 - gmx:100790763 1914.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0577 13 3756225 3762875 Lal13g0577 13 3756225 3762875 ECH
Lal12g0552 12 3957653 3965452 Lal13g0577 13 3756225 3762875 LSH
Lal13g0577 13 3756225 3762875 Lal24g0459 24 3236569 3242001 LSH