LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g0577	ATGTCTTCCTCAAGGCCTAGCCAATCGTCCACCAATTCAGGAAGACCAAGAAATAGTGCTAGGGTCATTGCTCAGACCACAGTAGATGCAAAACTCCATGCAAACTTTGAGGAGTCAGGTTGTTCCTTTGATTACTCCAGTTCAGTGCGCGTCTCTGGGACAGTGGGCGGAGACCATCAACCAAGGTCTGACAGAGTAACAACAGCTTACCTCCATCATATTCAGAAAGGCAAGCAGATCCAGCCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACCTGCAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTGACCATGATGAGTCATGCTGTCCCCAATGTTGTTGACCACCCTGCCCTTGGGATTGGCACTGACATAAGAACTATTTTCACTGCACCAAGTGCTTCTGCATTGCAAAAGGCACTAGGATTTGGAGAGGTTTCACTTCTTAACCCAATCCTAGTTCATTGCAAGACTTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGCAGTTTGATCATCGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTGGCTGCCAAAGCAATAACCCGTCTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGTGAGGTGATTGCTGAGATAGCAAAGCCAAGCCTAGAATCATATCTGGGTTTACACTATCCAGCCACCGATATTCCCCAGGCTTCACGCTTTTTGTTCATGAAGAACAAGGTCCGCATGATAGTAGATTGTCATGCAAGACATGTGAAGGTTCTTCAAGATGAGAAGCTCCCTATTGATTTGACTTTGTGTGGTTCAACTTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGCAAACATGGATTCCATTGCTTCCCTTGTTATGGCAGTAGTAGTCAATGACAACGATGAAGATGGGGATACCTCCGATGCTGTTCAGCCTCAGAAGAGAAAGAGACTCTGGGGTTTGGTAGTTTGCCATAACACTACTCCAAGGTTTGTTCCATTTCCTCTAAGATATGCATGTGAATTTCTGACTCAAGTATTTGCCATCCATGTGAACAAGGAAATAGAGTTAGAACTTCAGATTATTGAGAAGAATATACTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCACCCTTAGGTATTGTATCACAGAGCCCCAATATAATGGATCTAGTAAAGTGTGATGGGGCTGCTCTTTTTTATAAAAACAAGGTATGGAGATTAGGAGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTATGGCTTTCTGAGCACCATATGGATTCAACAGGTTTGAGTACAGATAGCTTGTTAGATGCAGGATTCCCAGGGGCTCTTTCTCTTGGTGATACTGTATGTGGAATGGCAGCCGTTAGAATAGCTTCAAAAGACACAGTTTTCTGGTTCCGGTCACACACTGCTTCAGAAATCCGTTGGGGTGGTGCAAAGCAAGAACCTGGTGAAAGGGATGATGGTAGGAAGATGCACCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAGCTAATACTTAGAAATGCATTCAGAGATACAGTGACTACACATATAAACACAAGTGCAATCGATACAAGACTAAGTGATTTGAGGATCGAAGGGATGCAGGAATTGGAAGCAGTGGCAAGTGAAATGGTTAGGTTAATTGAAACAGCTACAGTGCCTATTTTGGCAGTTGATATTAATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTAACAGGTCTTCCAGTTGGTGATGCTATTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAATTGATAGAGTCAAGAAGATGCTTGACATGGCACTGCAGGTTCTTGGGAAGGAAGGGATGGAGGGGTTGTGTGGGGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTTACATGGATTCTGGTCCTGTTAGCTTGGTAGTAAATGCTTGTGCAAGTAGGGATCTTCGAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAAAAGACTGTCATGGACAAATTCACTAAAATTGAAGGTGACTACAAGGCAATTGTGCAGAATCCCAACCCATTAATCCCCCCAATATTTGGCACAGATGAATTTGGTTGGTGTTGTGAGTGGAATCAAGCTATGACAAAGTTAACTGGGTGGAAGAGAGAAGAGGTCATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACTCAGAAGGCTTGCTGTCGTCTGAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTCAATGAAGCAATGACTGGTTCAGAAACAGCAAAGGTTGCTTTTGGTTTCATTGCTCGGAATGGGAAGTATGTAGATTGCCTTCTTTCAGTGAGTAAGAAATTTGACACAGACGGTGCAGTTACCGGGATATTCTGCTTCTTGCAGCTAGCCAGCCCAGAGCTGCAACGAGCATTACATATTCAACGCTTATCTGAGAAAACAGCCTTGAAGAGACTGAAATCTTTGAGTTATATTAAAAGGCAGATCAGGAACCCCTTAAGTGGGATTATGTTTACCAGGAAATTGCTTGAGGGTACTGAGTTGGGAACAGAACAAGTACAACTTCTGCACACTAGCGCTCAGTGCCAGCGCCAGCTTAGCAAAATTATTGAGGACTCAGATCTTGACAGCATCATTGACGGTTGTTTGGATCTTGAGATGGCCGAGTTCACTCTGCATGATGTATTGGCTGCCTCCCTTAGTCAAGTCATGCTAAAGTGTAATGCAAAGGGTATCCAAATAATCAATGATGTTGCAGAGCAGATCAGGATTGAAACCTTGTATGGTGATTGCCTTAGGCTTCAACAGGTCGTCGCCGACTTTTTAGTGATTTCCATCAATTTTACACCAAATGGGGGTCAAGTTGTTGTTGCAGCCTCTCTAACCAAACAACAGTTAGGGCAATCCGTCCACCTTGTTAACTTGGAGCTCAGCATAACACATGCTGGTAGTGGTGTGCCAGAATCATTGTTGAACCAAATGTTTGAAAATGGTGGGCAAGAATCAGAGGAGGGTATTAGCTTACTAATCAGTAGAAAGCTATTAAAGCTCATGAGTGGAGATGTGCGATATCTAAGAGAAGCAGACAAATCTTCTTTAATCCTATCTGTTGAACTTGCTGCAGCTCATAAGTTGAAACCTTAA	3408	0.4308	MSSSRPSQSSTNSGRPRNSARVIAQTTVDAKLHANFEESGCSFDYSSSVRVSGTVGGDHQPRSDRVTTAYLHHIQKGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMMSHAVPNVVDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPSLESYLGLHYPATDIPQASRFLFMKNKVRMIVDCHARHVKVLQDEKLPIDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDNDEDGDTSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVNKEIELELQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYKNKVWRLGVTPSESQIREIALWLSEHHMDSTGLSTDSLLDAGFPGALSLGDTVCGMAAVRIASKDTVFWFRSHTASEIRWGGAKQEPGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDTVTTHINTSAIDTRLSDLRIEGMQELEAVASEMVRLIETATVPILAVDINGLVNGWNTKIAELTGLPVGDAIGKHLLTLVEDSSIDRVKKMLDMALQVLGKEGMEGLCGEEEKNVQFEIKTHGSYMDSGPVSLVVNACASRDLRDNVVGVCFVAHDITAQKTVMDKFTKIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNQAMTKLTGWKREEVMDKMLLGEVFGTQKACCRLKNQEAFVNFGIVLNEAMTGSETAKVAFGFIARNGKYVDCLLSVSKKFDTDGAVTGIFCFLQLASPELQRALHIQRLSEKTALKRLKSLSYIKRQIRNPLSGIMFTRKLLEGTELGTEQVQLLHTSAQCQRQLSKIIEDSDLDSIIDGCLDLEMAEFTLHDVLAASLSQVMLKCNAKGIQIINDVAEQIRIETLYGDCLRLQQVVADFLVISINFTPNGGQVVVAASLTKQQLGQSVHLVNLELSITHAGSGVPESLLNQMFENGGQESEEGISLLISRKLLKLMSGDVRYLREADKSSLILSVELAAAHKLKP	1135

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g0577	1135	SMART	HisKA_10	905	970	IPR003661	GO:0000155\|GO:0007165
	Lal13g0577	1135	TIGRFAM	sensory_box: PAS domain S-box protein	624	750	IPR000014	-
	Lal13g0577	1135	SMART	gaf_1	218	411	IPR003018	GO:0005515
	Lal13g0577	1135	ProSitePatterns	Phytochrome chromophore attachment site signature.	318	327	IPR013516	-
	Lal13g0577	1135	PIRSF	Phytochrome_conventional	1	1135	IPR012129	GO:0006355\|GO:0009585\|GO:0009881\|GO:0017006\|GO:0042803
	Lal13g0577	1135	SUPERFAMILY	PYP-like sensor domain (PAS domain)	775	881	IPR035965	-
	Lal13g0577	1135	ProSiteProfiles	PAS repeat profile.	617	685	IPR000014	-
	Lal13g0577	1135	Pfam	Phytochrome region	414	587	IPR013515	GO:0006355\|GO:0009584
	Lal13g0577	1135	Gene3D	-	199	562	IPR029016	-
	Lal13g0577	1135	Gene3D	PAS domain	74	321	-	-

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g0577	Lal-Chr13	3756225	3762875	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal13g0577	1	1132	Histidine Kinase Gene Family	AT1G09570	78.023	0.0	1858

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g0577	K12120		-	gmx:100790763	1914.43

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal13g0577	13	3756225	3762875	Lal13g0577	13	3756225	3762875	ECH
	Lal12g0552	12	3957653	3965452	Lal13g0577	13	3756225	3762875	LSH
	Lal13g0577	13	3756225	3762875	Lal24g0459	24	3236569	3242001	LSH

Showing 1 to 3 of 3 entries