Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0573 | ATGGCTTCAATCATAGGCGTTTCTTCCATTTACCAAACCCCTTCTCTTAGACGACAACAAACTAACCCCTCCGTTTCATTAAAACCATTGTCGTTTGACAACAAGTCTCACTTCAACACTGTTCTCAGAGCTCACCTCAATAACCGAACCCTTTCTGCAATTGCTACCAACAATTCTTCTGTTCTCAGTGAAGAAGCTTTCAATGGTCTTGGTTTTGATAATGTCACTGATCAGTTACGTGGTTTTGACTACGAAAATTCAAACCCTTCTTCTTCTGTTCCTGTAAGTAAAGATGAACTTGATGTTTCTAAGTTGGATTTGCCTTCCAGACTCGTACAATCGCTCAATAAACGTGGAATTACTCACCTTTTCCCTATTCAGAGAGCTGTGCTAGTGCCTGCACTAGAAGGTAAAGATATTATTGCTCGGGCAAAGACTGGAACTGGAAAGACGTTAGCGTTTGGAATTCCGATTCTTAAAGGCCTTACTGATGATGATCGTAATTCTCAGAGGCGTGGTCGCCTTCCGAAAGCATTGATCCTTGCGCCTACAAGGGAGTTGGCAAAGCAAGTGGAGAAAGAGATAAATGAATCTGCACCATATCTGAACACAGTTTGTGTCTATGGTGGTGTTTCCTATGTAACACAGCAAAGTTCACTGTCACGTGGAGTTGATGTAGTGGTTGGGACACCTGGTAGAATAATTGACCTAATAAATGGGAACACCCTTAAACTGAATGAAATTCAGTATTTAGTCCTCGATGAAGCTGACCGTATGCTTGCTGTTGGATTTGAGGAGGATGTAGAAACAATTTTAGAGACGGTCCCAGCTGAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCTGGTTGGGTGCAGAAACTGTCAAGAAAATATTTGAACAAACCATTGACAATAGATTTGGTTGGTGATGAAGATGAAAAGCTAGCTGAAGGAATCAAGCTTTATGCTATGTCAGCCACCTCTTCTTCGAAGAGGACAGTTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTCACGCAGACAAAAAAAGATGCTGATGAAGTATCATTGTCCCTAACAAATATTATATCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGGAAATTCACAGTGCTGGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTATGAACTTCCCAATGATCCTGAGACTTTTGTACACCGCTCTGGTCGAACTGGGCGTGCAGGAAAACTAGGTTCTGCAATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCACTTGAGCGTGATGTCGGCTGCAAATTTGAATTTATTAGTCCACCAGCAATAGGAGAGATCTTGGAGTCATCCGCCCAGCAAGTTGTTGCTACACTTAAACTTGTTCATCCCGAGTCTATTGAGTACTTCATGCCAACCGCACAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCACTAGCACAGTTGAGTGGATTCTCTCGACCTCCGTCATCCCGGTCTCTTATCAACCATGAACAGGGATGGATTACGTTACAACTGACTCGAGATGGAGATAACTCTAGAAGATTTCTTTCCGCAAGATCAGTAACTGGGTTTTTATCTGATGTTTATTCTCCAGCTGCTGATGAGGTTGGAAAAATACACTTAATTGCAGATGAAAAGGTTCAAGGTGCTGTTTTTGATCTTCCAGAGGAGATTGCAAAAGAGTTACTCACTAAGGAGGTACCACCAGGCAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTGCAAGTGATTTCTATGGGAGGTTTTCCGATGACAGAGAACAAGGAAGTTCTAGAAATCAGAGAGGAGGTTTTAGGAGCTCACGATCATGGGGAGGTAGTGGCCGAAACTCTGACGATGACTTTGGTGATTCATATGGGAGAGGTGGCGGTAGAAGTTATAGATCTGGCAACAACAGGTCTCAAACGAGAAGCGGTGGGGATGACTGGCTGATTGGAGGTAGAGGATCAAGCAGGTCTTCATCAAACAGAGGAGGCTACGGAGGAGGGAGCTATGGAGGAGGGGCCTGTTTTAATTGTGGACAATCTGGGCATAGGGCAGCAGAATGTCCTAAGAAGAGAGACTTTTTCTAG | 2244 | 0.4354 | MASIIGVSSIYQTPSLRRQQTNPSVSLKPLSFDNKSHFNTVLRAHLNNRTLSAIATNNSSVLSEEAFNGLGFDNVTDQLRGFDYENSNPSSSVPVSKDELDVSKLDLPSRLVQSLNKRGITHLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDDDRNSQRRGRLPKALILAPTRELAKQVEKEINESAPYLNTVCVYGGVSYVTQQSSLSRGVDVVVGTPGRIIDLINGNTLKLNEIQYLVLDEADRMLAVGFEEDVETILETVPAERQTMLFSATMPGWVQKLSRKYLNKPLTIDLVGDEDEKLAEGIKLYAMSATSSSKRTVLSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNIISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTSSQRRTVRSLERDVGCKFEFISPPAIGEILESSAQQVVATLKLVHPESIEYFMPTAQKLVEEQGASALAAALAQLSGFSRPPSSRSLINHEQGWITLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHLIADEKVQGAVFDLPEEIAKELLTKEVPPGNTISKITKLPPLQDDGPASDFYGRFSDDREQGSSRNQRGGFRSSRSWGGSGRNSDDDFGDSYGRGGGRSYRSGNNRSQTRSGGDDWLIGGRGSSRSSSNRGGYGGGSYGGGACFNCGQSGHRAAECPKKRDFF | 747 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0573 | 747 | MobiDBLite | consensus disorder prediction | 614 | 718 | - | - | |
Lal13g0573 | 747 | SMART | c2hcfinal6 | 726 | 742 | IPR001878 | GO:0003676|GO:0008270 | |
Lal13g0573 | 747 | Gene3D | - | 101 | 310 | IPR027417 | - | |
Lal13g0573 | 747 | SMART | helicmild6 | 360 | 440 | IPR001650 | - | |
Lal13g0573 | 747 | Gene3D | - | 718 | 745 | - | - | |
Lal13g0573 | 747 | PANTHER | - | 13 | 738 | - | - | |
Lal13g0573 | 747 | Gene3D | - | 321 | 522 | IPR027417 | - | |
Lal13g0573 | 747 | SMART | ultradead3 | 119 | 323 | IPR014001 | - | |
Lal13g0573 | 747 | Pfam | GUCT (NUC152) domain | 527 | 627 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Lal13g0573 | 747 | Pfam | Helicase conserved C-terminal domain | 335 | 440 | IPR001650 | - | |
Lal13g0573 | 747 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 13 | 738 | - | - | |
Lal13g0573 | 747 | CDD | SF2_C_DEAD | 320 | 449 | - | - | |
Lal13g0573 | 747 | MobiDBLite | consensus disorder prediction | 635 | 649 | - | - | |
Lal13g0573 | 747 | CDD | GUCT_Hera | 534 | 614 | - | - | |
Lal13g0573 | 747 | ProSiteProfiles | Zinc finger CCHC-type profile. | 727 | 742 | IPR001878 | GO:0003676|GO:0008270 | |
Lal13g0573 | 747 | MobiDBLite | consensus disorder prediction | 650 | 665 | - | - | |
Lal13g0573 | 747 | Pfam | Zinc knuckle | 726 | 742 | IPR001878 | GO:0003676|GO:0008270 | |
Lal13g0573 | 747 | MobiDBLite | consensus disorder prediction | 682 | 696 | - | - | |
Lal13g0573 | 747 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 335 | 495 | IPR001650 | - | |
Lal13g0573 | 747 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 177 | 461 | IPR027417 | - | |
Lal13g0573 | 747 | CDD | DEADc | 111 | 307 | - | - | |
Lal13g0573 | 747 | Pfam | DEAD/DEAH box helicase | 124 | 295 | IPR011545 | GO:0003676|GO:0005524 | |
Lal13g0573 | 747 | SUPERFAMILY | Retrovirus zinc finger-like domains | 708 | 745 | IPR036875 | GO:0003676|GO:0008270 | |
Lal13g0573 | 747 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 252 | 260 | IPR000629 | - | |
Lal13g0573 | 747 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 131 | 306 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0573 | Lal-Chr13 | 3740689 | 3745866 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0573 | 105 | 462 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 36.364 | 2.18e-64 | 218 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0573 | - | - | vra:106757668 | 1029.62 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal13g0573 | 13 | 3740689 | 3745866 | Lal13g0573 | 13 | 3740689 | 3745866 | ECH | |
Lal13g0573 | 13 | 3740689 | 3745866 | Lal24g0456 | 24 | 3215035 | 3220683 | LSH | |
Lal3g1418 | 3 | 20081257 | 20085658 | Lal13g0573 | 13 | 3740689 | 3745866 | PCT | |
Lal13g0573 | 13 | 3740689 | 3745866 | Lal3g1418 | 3 | 20081257 | 20085658 | PCT |