Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0573 ATGGCTTCAATCATAGGCGTTTCTTCCATTTACCAAACCCCTTCTCTTAGACGACAACAAACTAACCCCTCCGTTTCATTAAAACCATTGTCGTTTGACAACAAGTCTCACTTCAACACTGTTCTCAGAGCTCACCTCAATAACCGAACCCTTTCTGCAATTGCTACCAACAATTCTTCTGTTCTCAGTGAAGAAGCTTTCAATGGTCTTGGTTTTGATAATGTCACTGATCAGTTACGTGGTTTTGACTACGAAAATTCAAACCCTTCTTCTTCTGTTCCTGTAAGTAAAGATGAACTTGATGTTTCTAAGTTGGATTTGCCTTCCAGACTCGTACAATCGCTCAATAAACGTGGAATTACTCACCTTTTCCCTATTCAGAGAGCTGTGCTAGTGCCTGCACTAGAAGGTAAAGATATTATTGCTCGGGCAAAGACTGGAACTGGAAAGACGTTAGCGTTTGGAATTCCGATTCTTAAAGGCCTTACTGATGATGATCGTAATTCTCAGAGGCGTGGTCGCCTTCCGAAAGCATTGATCCTTGCGCCTACAAGGGAGTTGGCAAAGCAAGTGGAGAAAGAGATAAATGAATCTGCACCATATCTGAACACAGTTTGTGTCTATGGTGGTGTTTCCTATGTAACACAGCAAAGTTCACTGTCACGTGGAGTTGATGTAGTGGTTGGGACACCTGGTAGAATAATTGACCTAATAAATGGGAACACCCTTAAACTGAATGAAATTCAGTATTTAGTCCTCGATGAAGCTGACCGTATGCTTGCTGTTGGATTTGAGGAGGATGTAGAAACAATTTTAGAGACGGTCCCAGCTGAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCTGGTTGGGTGCAGAAACTGTCAAGAAAATATTTGAACAAACCATTGACAATAGATTTGGTTGGTGATGAAGATGAAAAGCTAGCTGAAGGAATCAAGCTTTATGCTATGTCAGCCACCTCTTCTTCGAAGAGGACAGTTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTCACGCAGACAAAAAAAGATGCTGATGAAGTATCATTGTCCCTAACAAATATTATATCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGGAAATTCACAGTGCTGGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTATGAACTTCCCAATGATCCTGAGACTTTTGTACACCGCTCTGGTCGAACTGGGCGTGCAGGAAAACTAGGTTCTGCAATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCACTTGAGCGTGATGTCGGCTGCAAATTTGAATTTATTAGTCCACCAGCAATAGGAGAGATCTTGGAGTCATCCGCCCAGCAAGTTGTTGCTACACTTAAACTTGTTCATCCCGAGTCTATTGAGTACTTCATGCCAACCGCACAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCACTAGCACAGTTGAGTGGATTCTCTCGACCTCCGTCATCCCGGTCTCTTATCAACCATGAACAGGGATGGATTACGTTACAACTGACTCGAGATGGAGATAACTCTAGAAGATTTCTTTCCGCAAGATCAGTAACTGGGTTTTTATCTGATGTTTATTCTCCAGCTGCTGATGAGGTTGGAAAAATACACTTAATTGCAGATGAAAAGGTTCAAGGTGCTGTTTTTGATCTTCCAGAGGAGATTGCAAAAGAGTTACTCACTAAGGAGGTACCACCAGGCAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTGCAAGTGATTTCTATGGGAGGTTTTCCGATGACAGAGAACAAGGAAGTTCTAGAAATCAGAGAGGAGGTTTTAGGAGCTCACGATCATGGGGAGGTAGTGGCCGAAACTCTGACGATGACTTTGGTGATTCATATGGGAGAGGTGGCGGTAGAAGTTATAGATCTGGCAACAACAGGTCTCAAACGAGAAGCGGTGGGGATGACTGGCTGATTGGAGGTAGAGGATCAAGCAGGTCTTCATCAAACAGAGGAGGCTACGGAGGAGGGAGCTATGGAGGAGGGGCCTGTTTTAATTGTGGACAATCTGGGCATAGGGCAGCAGAATGTCCTAAGAAGAGAGACTTTTTCTAG 2244 0.4354 MASIIGVSSIYQTPSLRRQQTNPSVSLKPLSFDNKSHFNTVLRAHLNNRTLSAIATNNSSVLSEEAFNGLGFDNVTDQLRGFDYENSNPSSSVPVSKDELDVSKLDLPSRLVQSLNKRGITHLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDDDRNSQRRGRLPKALILAPTRELAKQVEKEINESAPYLNTVCVYGGVSYVTQQSSLSRGVDVVVGTPGRIIDLINGNTLKLNEIQYLVLDEADRMLAVGFEEDVETILETVPAERQTMLFSATMPGWVQKLSRKYLNKPLTIDLVGDEDEKLAEGIKLYAMSATSSSKRTVLSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNIISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTSSQRRTVRSLERDVGCKFEFISPPAIGEILESSAQQVVATLKLVHPESIEYFMPTAQKLVEEQGASALAAALAQLSGFSRPPSSRSLINHEQGWITLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHLIADEKVQGAVFDLPEEIAKELLTKEVPPGNTISKITKLPPLQDDGPASDFYGRFSDDREQGSSRNQRGGFRSSRSWGGSGRNSDDDFGDSYGRGGGRSYRSGNNRSQTRSGGDDWLIGGRGSSRSSSNRGGYGGGSYGGGACFNCGQSGHRAAECPKKRDFF 747
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0573 747 MobiDBLite consensus disorder prediction 614 718 - -
Lal13g0573 747 SMART c2hcfinal6 726 742 IPR001878 GO:0003676|GO:0008270
Lal13g0573 747 Gene3D - 101 310 IPR027417 -
Lal13g0573 747 SMART helicmild6 360 440 IPR001650 -
Lal13g0573 747 Gene3D - 718 745 - -
Lal13g0573 747 PANTHER - 13 738 - -
Lal13g0573 747 Gene3D - 321 522 IPR027417 -
Lal13g0573 747 SMART ultradead3 119 323 IPR014001 -
Lal13g0573 747 Pfam GUCT (NUC152) domain 527 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lal13g0573 747 Pfam Helicase conserved C-terminal domain 335 440 IPR001650 -
Lal13g0573 747 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 13 738 - -
Lal13g0573 747 CDD SF2_C_DEAD 320 449 - -
Lal13g0573 747 MobiDBLite consensus disorder prediction 635 649 - -
Lal13g0573 747 CDD GUCT_Hera 534 614 - -
Lal13g0573 747 ProSiteProfiles Zinc finger CCHC-type profile. 727 742 IPR001878 GO:0003676|GO:0008270
Lal13g0573 747 MobiDBLite consensus disorder prediction 650 665 - -
Lal13g0573 747 Pfam Zinc knuckle 726 742 IPR001878 GO:0003676|GO:0008270
Lal13g0573 747 MobiDBLite consensus disorder prediction 682 696 - -
Lal13g0573 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 495 IPR001650 -
Lal13g0573 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 461 IPR027417 -
Lal13g0573 747 CDD DEADc 111 307 - -
Lal13g0573 747 Pfam DEAD/DEAH box helicase 124 295 IPR011545 GO:0003676|GO:0005524
Lal13g0573 747 SUPERFAMILY Retrovirus zinc finger-like domains 708 745 IPR036875 GO:0003676|GO:0008270
Lal13g0573 747 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Lal13g0573 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 306 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal13g0573 Lal-Chr13 3740689 3745866 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0573 105 462 Eukaryotic Initiation Factors Gene Family AT1G72730 36.364 2.18e-64 218
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0573 - - vra:106757668 1029.62
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0573 13 3740689 3745866 Lal13g0573 13 3740689 3745866 ECH
Lal13g0573 13 3740689 3745866 Lal24g0456 24 3215035 3220683 LSH
Lal3g1418 3 20081257 20085658 Lal13g0573 13 3740689 3745866 PCT
Lal13g0573 13 3740689 3745866 Lal3g1418 3 20081257 20085658 PCT