Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0567 ATGACAAACATGACTACAATGAAGCTGGTTTTGTTAGCCGTTGGGTTTGCATGCTTAGTTTCTGGGGTTATTTCCTCTGGATCTGACACACTCTCTATGCTTTCCTTCTTAGAGAATGGTGCTGTCTCAGTCTCGAGTACAAAGCCTTCTTCTTTACCCCAACCTCTCATGGTTGGCCTCACTCTTATTCAGAGAGCTGCTTCTACAGGAGCTGTGTGTTTGGATGGAACATTACCTGGTTACCATTTGGATCGTGGATTTGGATCCGGTGCAAATAGTTGGCTTGTTCATTTGGAGGGAGGAGGATGGTGTAATACCATTAGAAACTGTGTCTACAGAAAAGCTACTCGTCGCGGTTCCTCAAATTATATGGAAAGTCAAATACCATTCACGGGAATATTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAATTGGAACAGAGTCAAATTAAGGTACTGTGATGGGGCATCTTTCAGTGGTGATAGTCAAGATGAGTCTTCACAGCTTCAATTCCGAGGACAAAGGATATGGCTAGCTGCAATTGAGGAATTAATGTCCAAAGGAATGCAGAATGCTGAACAGGCCCTTCTCTCCGGATGCTCCGCGGGTGGTCTGGCATCTATAATTCATTGTGATGAGTTCCGGAACTCGTTTCCAGAATCTACCAGAGTTAAATGTTTGAGTGATGCAGGATTTTTTCTTGACGCAACTGATGTATCTGGAGGGCATACACTGAGGAATCTGTTTGAAGGTGTAGTTCAGTTGCAGGTGGAAGTACAAAAGAATTTGCCAACTAGTTGTCTCAACAAACTGGATCCGACTTCGTGCTTCTTTCCTCAGAATATGGTCGAGCATGTTGAGACTCCATTGTTTCTACTCAATGCGGCTTATGATTCATGGCAGGTTCAAGCCAGTTTAGCCCCATCTTCAGCTGACCCCTTTGGCTATTGGAATGACTGCAAATCAAACCATGCAAATTGTAACTCATCTCAAATTCAGTTCCTCCAAGAGTTCAGAGTTCAAATGCTAAATGACTTGAAAGACTTCTCAAGTTCATCTCAAACCGGGCTATTCATAAATTCTTGTTTTTCTCATTGCCAATCTGAGAGACAAGGGACATGGTTTTCTGATGACTCCCCTCTTCTTGGGAACACGACAATGGATATTGAATATAGTGAGGATTCGAAAAACATTCTGGAAAACCTCTTTGCCATGACAACAGCTCTTAGAACATGTCACAGAAACATATCAATATGCCAATTGCAGTTGCTGTGGGAGACTGGTATTTTGATAGAGAAGTTTTCAAAGCTATTGACTGTGCCTATCCCTGTGATAACACCTGCCATCATCTGGTTTTTAAGTGATACAAATTTATTGTCTCCTCATATGGTAATATGA 1404 0.4195 MTNMTTMKLVLLAVGFACLVSGVISSGSDTLSMLSFLENGAVSVSSTKPSSLPQPLMVGLTLIQRAASTGAVCLDGTLPGYHLDRGFGSGANSWLVHLEGGGWCNTIRNCVYRKATRRGSSNYMESQIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQDESSQLQFRGQRIWLAAIEELMSKGMQNAEQALLSGCSAGGLASIIHCDEFRNSFPESTRVKCLSDAGFFLDATDVSGGHTLRNLFEGVVQLQVEVQKNLPTSCLNKLDPTSCFFPQNMVEHVETPLFLLNAAYDSWQVQASLAPSSADPFGYWNDCKSNHANCNSSQIQFLQEFRVQMLNDLKDFSSSSQTGLFINSCFSHCQSERQGTWFSDDSPLLGNTTMDIEYSEDSKNILENLFAMTTALRTCHRNISICQLQLLWETGILIEKFSKLLTVPIPVITPAIIWFLSDTNLLSPHMVI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0567 467 Pfam Pectinacetylesterase 54 389 IPR004963 GO:0016787
Lal13g0567 467 PANTHER PECTIN ACETYLESTERASE 6 389 - -
Lal13g0567 467 PANTHER NOTUM-RELATED 6 389 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0567 Lal-Chr13 3707710 3712240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0567 10 384 Carbohydrate Esterase AT3G62060 65.535 0.0 525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0567 13 3707710 3712240 Lal13g0582 13 3798176 3802804 ECH
Lal13g0567 13 3707710 3712240 Lal5g0198 5 1710501 1717222 ECH
Lal13g0567 13 3707710 3712240 Lal13g0567 13 3707710 3712240 ECH
Lal5g0198 5 1710501 1717222 Lal13g0567 13 3707710 3712240 PCT
Lal13g0567 13 3707710 3712240 Lal5g0198 5 1710501 1717222 PCT