Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0566 ATGGGAAGGCACTCTTGCTGTTTTAAACAGAAGCTTAGAAAGGGTCTCTGGTCTCCTGAGGAGGATGAAAAACTTCTCAACCATATTACTATTCATGGCCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGCAAGAGTTGCAGGCTAAGGTGGTTAAACTACTTAAGGCCTGATTTAAAGAGAGGTACATTCTCACAAGAAGAAGAGAATCTTATCATTGAACTTCATGCAGTATTAGGGAACAGATGGTCTCAAATCGCGGCACAACTGCCGGGGAGGACTGATAATGAAATAAAGAATTTGTGGAACTCTTGCCTGAAGAAGAGACTGAGGCAAAGTGGTATAGATCCTGTGACACATAAACCACTATCTGAGGTTGAGAATAGAGAGGACAATGGTAATAGCAAAGAGAAAGCACCAGAAGTATCTAATGAATTGAACCTTCTGAAATCAGAAAGCTCCAAATCAGATGCAGCTTCATATGAGCAAAGAACTTCTTCAATCTCTCCAAAAGCCTATGCACCTGAGATGGAAGGTTCTTCTCACAGCACCAAATTTTACACCAAAAGTGACACCAATTTGATAACCAACTGTTGCAGCAAGGACTTGTTCCAAGACAGATTTATGACCAATTGCCACTCCTCTGATTTCATGGAGAATTTTTCAAATCAAATGAGTTATGCATCCACTGACTATATCCCAAATGATTCAAACTCCAGTCATTGGTTCAGCCAAACTTCAAGGCCTTTTGATATAAACTCTGAATATCCTTTCAATGCCACTTCTATTCTTACACCTACAACAAGCATGTTTCTTCCAACTTTTAACTACAAGCCTTTGGTTGTTCCCTCTGATAATATCTCTACACACTATGGATCCCACTATTGGGAAGCTAGTGCCTTAAACAACAGTAATAGCAGCAATGGGAGTAATAGCAGCACAGAGTTAAGAAGTAGCAGCCCTTTAAATGTACACAACAATATATTTTCTTCTTGGGGAATGGCAGATTGTAGCACCTCTACTAGAGAGGCACAAATTCATATGATGGAAAATCAGATAGAAGAAGCAAAGTGGAATGAGTACCTTCATAATCCAATGCCAATGCTGGCTTCTATACAAAATCAAAATCATGCTCCTGAAACTTTATGCAATGAGATAAAGCCCACCACACATTTTATGCCTGAAACTTTAGGGGCTATATTACCTCATAATCATACTAAGCAGCAAGAACTATCACAAAGTTCTAGTATCATTTCCAAGGACATTCAGAAGCTCACATCAGCCTTTGGACATATATAG 1317 0.3971 MGRHSCCFKQKLRKGLWSPEEDEKLLNHITIHGHGCWSSVPKQAGLQRCGKSCRLRWLNYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPVTHKPLSEVENREDNGNSKEKAPEVSNELNLLKSESSKSDAASYEQRTSSISPKAYAPEMEGSSHSTKFYTKSDTNLITNCCSKDLFQDRFMTNCHSSDFMENFSNQMSYASTDYIPNDSNSSHWFSQTSRPFDINSEYPFNATSILTPTTSMFLPTFNYKPLVVPSDNISTHYGSHYWEASALNNSNSSNGSNSSTELRSSSPLNVHNNIFSSWGMADCSTSTREAQIHMMENQIEEAKWNEYLHNPMPMLASIQNQNHAPETLCNEIKPTTHFMPETLGAILPHNHTKQQELSQSSSIISKDIQKLTSAFGHI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0566 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal13g0566 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g0566 438 MobiDBLite consensus disorder prediction 128 144 - -
Lal13g0566 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal13g0566 438 CDD SANT 17 61 IPR001005 -
Lal13g0566 438 SMART sant 13 63 IPR001005 -
Lal13g0566 438 SMART sant 66 114 IPR001005 -
Lal13g0566 438 MobiDBLite consensus disorder prediction 152 176 - -
Lal13g0566 438 Gene3D - 69 146 - -
Lal13g0566 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal13g0566 438 PANTHER HOMEODOMAIN-RELATED 1 432 - -
Lal13g0566 438 PANTHER MYB DOMAIN PROTEIN 55 1 432 - -
Lal13g0566 438 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal13g0566 438 CDD SANT 69 109 IPR001005 -
Lal13g0566 438 MobiDBLite consensus disorder prediction 122 188 - -
Lal13g0566 438 Gene3D - 11 67 - -
Lal13g0566 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g0566 438 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0566 Lal-Chr13 3700200 3702576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0566 1 159 MYB Transcription Factor Family AT4G01680 78.616 9.12e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0566 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0566 K09422 - gmx:100815881 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0566 13 3700200 3702576 Lal12g0555 12 3975096 3977088 ECH
Lal13g0566 13 3700200 3702576 Lal13g0583 13 3805334 3807497 ECH
Lal13g0566 13 3700200 3702576 Lal24g0462 24 3261604 3263584 ECH
Lal13g0566 13 3700200 3702576 Lal3g1419 3 20090912 20092796 ECH
Lal13g0566 13 3700200 3702576 Lal13g0566 13 3700200 3702576 ECH
Lal12g0547 12 3916110 3918394 Lal13g0566 13 3700200 3702576 LSH
Lal3g1411 3 20033858 20035866 Lal13g0566 13 3700200 3702576 PCT
Lal13g0566 13 3700200 3702576 Lal3g1411 3 20033858 20035866 PCT