Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0563 ATGGCTGAGAAAATGCTTGATTCCACCCAACCAAGGATGAGAAGAAGCTCCATCAATCCACCCTCCATTTATGGCAATGATTCATATGAGCTGGTATGGGAAAGTGGTCATCAAATTATTGTGCATGGAGGTTCAAACAAAAGACCAGCTTCTACTGAAAGTGGTTACATATTCACACCTTTCAAACAACACTGTTTATCTTCATCAACTCCACTCAAGAAACCAAGAATTCATTCAAACCAAATTACACCACCAATAAAAAATGTTTTAAGACCTTCACTGTTTCTTAAATCTACTAACAATGAAAACAGTGCCACAACAAGTATGGAGTATATTATTAAAGCAACAAAGGTTGGAAAAACAGCTACTACTAGTAGCAAAACTATTGATCATGAATCTGTAGTTATTGATTCATCTAAAGGATCACATGGTTTCAGAAGACTTAAAGGGAAAACACCTTTAGTTTCTGGCATATCAAATCAGGTATCCTTTGTTGCAAGAAGTATGGAACCACTTCCTGAAGCAACAGGTCATAAAAGTGACCTTCATGGTTCCCATGCACAATATTATAACCAAACCTCAACTTCAGAAGGACTTGGAGCAAAGGTAAAAGCTGCTACTAACTTATGTAATGAACCTTTGCTACAATCTTCTTCTGTATGCTCTCTTGGAGCATCAAACAACACAAACCTTTGTAGCATGAAAAATGAGGAGACCGATGAGTCAACATATTTAAGTGATAATGGTGAAGAACAAGAAGTGGTGAAGGAAAAGCCTGCATGGGAGGGCAAACGCATTCGAGTCAAGAGAAGGAGGGATACAAAGATTCATAGTTTAAATGAAAGGAAGAGAAGAGATAAAATCAACAAGAAGATGCGTGTATTAAAAGAGCTCATACCTAATTGCAATAAGGTTGACCAAGCTTCAATGCTTGATGATGCCATCAAATATCTTAAGACCTTGAAGTTCCAGTTACAGATTATGTCAATGAGTAGAGGACTATATATGCCTCTTATGATGTTACCTAGTGCTGCTCAGCAATTAATGGGAGCTGGAATGGGTTTCAGGTCAGGAACAAACATTCCTCAGTACCCTATTCCACCATTGCCACCTTGCATCACTGATAACTCAGCTCAGATGTTTGGTTTCCCTAACCAAATGCCACCCATGCCCATGCCTCATGCTCCTTTCATGCCTATGTTTGGAAATCCTTCTACACAACCAATTCAGCCAACAAAAATAGCTACCAACTTAGGAGAGAATCTAGCTTCAGTCCCCAAGAGCTTTTATCTTGATGGGTGGGGTTAA 1308 0.3891 MAEKMLDSTQPRMRRSSINPPSIYGNDSYELVWESGHQIIVHGGSNKRPASTESGYIFTPFKQHCLSSSTPLKKPRIHSNQITPPIKNVLRPSLFLKSTNNENSATTSMEYIIKATKVGKTATTSSKTIDHESVVIDSSKGSHGFRRLKGKTPLVSGISNQVSFVARSMEPLPEATGHKSDLHGSHAQYYNQTSTSEGLGAKVKAATNLCNEPLLQSSSVCSLGASNNTNLCSMKNEETDESTYLSDNGEEQEVVKEKPAWEGKRIRVKRRRDTKIHSLNERKRRDKINKKMRVLKELIPNCNKVDQASMLDDAIKYLKTLKFQLQIMSMSRGLYMPLMMLPSAAQQLMGAGMGFRSGTNIPQYPIPPLPPCITDNSAQMFGFPNQMPPMPMPHAPFMPMFGNPSTQPIQPTKIATNLGENLASVPKSFYLDGWG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0563 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 341 IPR036638 GO:0046983
Lal13g0563 435 PANTHER TRANSCRIPTION FACTOR PIF3 1 424 IPR044273 GO:0003700|GO:0006355
Lal13g0563 435 CDD bHLH_AtPIF_like 272 334 - -
Lal13g0563 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Lal13g0563 435 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 424 - -
Lal13g0563 435 SMART finulus 278 327 IPR011598 GO:0046983
Lal13g0563 435 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g0563 435 Pfam Helix-loop-helix DNA-binding domain 277 321 IPR011598 GO:0046983
Lal13g0563 435 Gene3D - 268 330 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0563 Lal-Chr13 3675188 3677299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0563 205 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 37.917 6.72e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0563 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0563 K12126 - gmx:100818543 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0563 13 3675188 3677299 Lal13g0563 13 3675188 3677299 ECH
Lal3g1410 3 20018893 20023032 Lal13g0563 13 3675188 3677299 PCT
Lal5g0203 5 1747877 1752019 Lal13g0563 13 3675188 3677299 PCT
Lal13g0563 13 3675188 3677299 Lal3g1410 3 20018893 20023032 PCT
Lal13g0563 13 3675188 3677299 Lal5g0203 5 1747877 1752019 PCT