Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0560 ATGAGAAAAGGCTCTAGTTCTAATTCATCTTCATCTATCAATAGCACTAACATGAACCCTTTTATCTCAACTGCATCCTCTCTCACATACCAAAATAGTGAAGAACTTCATACAGATCTTAGGCTTGGACTCAGCATTCCCACCACTCCAAATATTGCCACTTCTATGTCAAGGGGGCAGTGGCAACAAATGCAGGCACATCTAAGTAGTTCATCACAAGGTGCTGAAGCAAATGATTGCATTGATCATGGGAACTTCTTTGTGAAGGTGTATATGGAAGGCATTCCTATTGGAAGAAAACTCAATCTATTAGCTCATGATGGGTACCTAGATTTAGTGAGAACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGGAATGAGATGAATAGAGTGCAAACAGAGAGATGTCATGTGCTAACATATGAGGATGGAGAAGGGGATTTGATTATGGTTGGTGATGTTCCTTGGAGGATGTTCTTATCAAGTGTAAAGAGGCTGAAGATCACAAGGGTTGATGCATTTGGGTGTTAA 537 0.4022 MRKGSSSNSSSSINSTNMNPFISTASSLTYQNSEELHTDLRLGLSIPTTPNIATSMSRGQWQQMQAHLSSSSQGAEANDCIDHGNFFVKVYMEGIPIGRKLNLLAHDGYLDLVRTLEQMFDTTILWGNEMNRVQTERCHVLTYEDGEGDLIMVGDVPWRMFLSSVKRLKITRVDAFGC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0560 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 177 IPR003311 GO:0005634|GO:0006355
Lal13g0560 178 PANTHER AUXIN-INDUCED PROTEIN 7 177 - -
Lal13g0560 178 Pfam AUX/IAA family 72 172 IPR033389 -
Lal13g0560 178 Gene3D - 80 177 - -
Lal13g0560 178 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
Lal13g0560 178 SUPERFAMILY CAD & PB1 domains 81 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0560 Lal-Chr13 3654706 3655836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0560 89 170 B3 DNA Binding Superfamily AT4G23980 40.244 7.59e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0560 AUX_IAA 8e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0560 K14484 - gmx:100781660 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0560 13 3654706 3655836 Lal13g0560 13 3654706 3655836 ECH
Lal13g0560 13 3654706 3655836 Lal24g0449 24 3155433 3158766 LSH
Lal5g0204 5 1769341 1770857 Lal13g0560 13 3654706 3655836 PCT
Lal13g0560 13 3654706 3655836 Lal5g0204 5 1769341 1770857 PCT