Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0556 ATGGCTTCAGATAATGGCCTTGATGAGGCCACAACATCAAATAAACCTCCTTCAGAAGACACACATGATGTGAAGAGCAAACAAAAAGAGAAACCTGAGACTGTTCCATTTCATAGGCTTTTCTCTTTTGCAGACTCAACTGATATTCTTTTGATGACTGTTGGAACCATTGGTGCTATTGGAAATGGTTTAGGTTTGCCTCTCATGACATTATTGTTTGGCCAAATGATTGATACCTTCGGAAGTATCCAGAGAACAGACCATGTAGTAGAAGAAGTTTCCAAGGTCTCTCTCAAATTTGTGTTCTTGGCCATAGGAACTGGTTTGGCATCATTCCTCCGTAAGCATATAGTATATTTTGCAATCGAAAATGTGATTTCAATAACTGATATAGACAATATCTTACCATACCTTATAGTTTCTGAGCAAAGGACAAAGGTGTCTTGCTGGATGGTCGCAGGGGAGAGACAGGCTGCGAGAATAAGAGGATTGTATTTGAAAACTATACTAAGACAAGATGTCGCTTTCTTTGATAAGGAAACAAACACTGGAGAGGTGATAGGGAGAATGTCAGGTGATACTGTTCTTATCCAAGACGCAATGGGAGAGAAAGTTGGCAAGTTTTTGCAGCTAATTGCAACATTCATTGGAGGCTTTGTGATAGCATTTGTCAAAGGATGGCTTCTTACTCTTGTAATGATGACCACTCTTCCACTTCTTGTTCTCTCCGGTGCTGCCATGGCAGTCATCATGGGCAGGATGACTTCTAAAGGTCAAACAGCTTATGCAAAAGCTGCTCATATAGTTGAACAGACAATTGGCTCAATTAGAACTGTTGCATCCTTTACTGGTGAAAAACAAGCAGTATCTTCTTATGACAAATTTCTTGTAGATGCTTACAGATCAGGAGTTCATGAAGGCTCCATAGCCGGAGCAGGCATAGGCACACTTATTTATGCTTTAGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGGGGCACTGTGATCAATGTGATTATTGCCGTGTTAACAGCATCAATGTCTCTAGGCCAGGCATCACCTAGCATGAGTGCTTTTGCTGCTGGTCAGGCTGCAGCTTTCAAAATGTTTCAAACAATTGAGAGGAAACCAAAGATAAATGCTTATGACCCAAACGGAAAAATATTAGAGGATATTCGAGGTGAAATAGAGTTAAGGGAAGTTCATTTCAGGTATCCAGCAAGACCTGATGAGGTAATATTCACTGGATTCTCTCTTCATATACCCAGTGGGACAACCGCAGCTTTAGTTGGACAAAGTGGAAGTGGAAAATCTACAGTTATCAGCTTAGTAGAAAGATTTTATGATCCACATGCAGGTGAAGTTCTTATTGATGGCATTAACCTCAAAGAATTTCAGCTTAGGTGGATCAGAAGAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCTTCTAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCAAAAATTGAAGAGATAAGAATAGCAACTGAACTTGCAAATGCCGCTAAGTTCATCGATAAATTGCCCCAGGGACTTGACACAATGGTTGGTGAGCATGGAACTCAGCTTTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAAGATCCAAGGATTCTACTTCTCGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGGGTAGTGCAAGAGGCGCTAGACAGGATCATGGTCAGTCGCACCACTGTTGTTGTGGCACATCGCCTGAGCACGGTGAGAAATGCTGACATGATTGCTGTAATTCAGAGAGGGAAGATGGTTGAGAAAGGTACACACTCAGAATTGCTTAGTGATCGTGAGGGAGCTTACTCTCAACTCATACGCTTACAAGAAATAAACAAGGAAACAAAAGAAACTGCAGATCGAAGCAAGAGTGAACTTTCAGAAGAATCCTTCAGACAATCAAGTCAAAAGAGGTCACTCGGAAAATCTACTAGTCAAGGGTCATCCGAAGGGAATAGCAGCAACTCATTTGGTCTACCTACACGAGTCAAAATCGCTGACACTGATCCTGAAAGCTCACAAGCTGAAGAAAAACCCCGAGAGGTTCCACTCTGGCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGCAGTTGCTGTAGCAAATGGTGTTATACTTCCAATATTTGGCTTGTTAGTTTCTAGTATCATCAAAACATTTTATGAACCATTTGATGAGTTGAAAAGGGACTCAAAATTTTGGGCAATAATGTTTATGATCCTTGGTCTTGCATCTTTCATAATAATACCAGCTCGAGCGTACTTTTTCTCTGTGGCTGGATGCAAATTAATCCAACGTATCAGGCATATGTGTTTTGAGAAGGTGGTGAACATGGAGGTTGGTTGGTTCGATAAGCCTGAGAACTCAAGTGGTGCAGTTGGTGCAAGGCTCTCGGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGGGATGCCCTGGGACTATTAATTGGAAATTTTGCAACTGCATTAGCAGGTTTGATTATTGCTTTCACTGCAAGCTGGGAACTGGCATTGATTATTCTTGTCTTGATTCCACTACTTGGACTAAATGGATATGTTCAAACGAAATTCATGAAAGGATTCAGCGCTGATGCAAAGATGATGTATGAAGAAGCAAGCCAGGTTGCTAATGATGCCGTTGGAAGCATAAGAACAATAGCTTCTTTCTGTGCCGAAGATAAGGTTATGGAACTGTACCGGAAGAAATGCGAAGGACCTACGAAAACAGGGATACGCCAAGGATTGATCAGTGGATCAGGGTATGGAGTTTCATTTTTCTTAATGTTCTGTGTCTACGCAACCACTTTCTATGCTGGAGCAAGGCTTGTGGAGGCTGGGAAAACAAAATTCGCAGATGTTTTCAGGGTTTTCTTTGCACTTACTATGACATCTCTTGGACTTTCCCAATCAAGTTCTTTTTCCCCCGACTCTAGCAAAGCCAAGTTGGCTACTGCATCTATATTTGGAATAATTGATAAGAAATCAAAGATAGATCCTAGTGATGAGTCTGGTACTACATTGGATTGTGTTAAGGGAGAAATTGAACTTCGTCACACAGTGGCGCTCGTTGGCGAAAGTGGGAGTGGGAAATCCACAGTAATTGCCTTGTTACAAAGATTCTATGATCCTGATTCAGGTGAAATCACACTTGACGGAATAGAAATTAAGCGTTTACAACTCAAGTGGTTAAGGCATCAAATGGGACTTGTAAGCCAAGAGCCAGTGTTGTTCAATGAAACTATCCGTGCCAATATTGCATATGGAAAGAGAGGCGATGCAACTGAAGCAGAAATCATAGCTGCAGCTGAAATGGCTAATGCACATAGATTTATCAGTGGCTTACAACAGGGTTATGATACTGTTGTGGGAGAGAGGGGACTTCAATTATCAGGTGGGCAAAAGCAACGAGTAGCTATTGCGCGCGCTATAATTAAGAGTCCGAAGATATTGCTACTAGACGAGGCCACAAGTGCCTTAGACGCAGAGTCAGAGAGAATTGTTCAAGATGCATTAGACAGAGTCATGGTGGATAGGACCACGGTGGTTGTGGCTCATCGGTTATCGACAATAAAAAATGCAGATGTGATTGCTGTTGTGAAAAATGGAGTTATAGTTGAAAAGGGAAGACATGAAACACTCATTAATATCAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATACAAGTTCTGCAACTGTGTGA 3813 0.4194 MASDNGLDEATTSNKPPSEDTHDVKSKQKEKPETVPFHRLFSFADSTDILLMTVGTIGAIGNGLGLPLMTLLFGQMIDTFGSIQRTDHVVEEVSKVSLKFVFLAIGTGLASFLRKHIVYFAIENVISITDIDNILPYLIVSEQRTKVSCWMVAGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFVKGWLLTLVMMTTLPLLVLSGAAMAVIMGRMTSKGQTAYAKAAHIVEQTIGSIRTVASFTGEKQAVSSYDKFLVDAYRSGVHEGSIAGAGIGTLIYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAFKMFQTIERKPKINAYDPNGKILEDIRGEIELREVHFRYPARPDEVIFTGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPHAGEVLIDGINLKEFQLRWIRRKIGLVSQEPVLFASSIKDNIAYGKEGAKIEEIRIATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVSRTTVVVAHRLSTVRNADMIAVIQRGKMVEKGTHSELLSDREGAYSQLIRLQEINKETKETADRSKSELSEESFRQSSQKRSLGKSTSQGSSEGNSSNSFGLPTRVKIADTDPESSQAEEKPREVPLWRLASLNKPEIPVLLIGCAVAVANGVILPIFGLLVSSIIKTFYEPFDELKRDSKFWAIMFMILGLASFIIIPARAYFFSVAGCKLIQRIRHMCFEKVVNMEVGWFDKPENSSGAVGARLSADAASVRALVGDALGLLIGNFATALAGLIIAFTASWELALIILVLIPLLGLNGYVQTKFMKGFSADAKMMYEEASQVANDAVGSIRTIASFCAEDKVMELYRKKCEGPTKTGIRQGLISGSGYGVSFFLMFCVYATTFYAGARLVEAGKTKFADVFRVFFALTMTSLGLSQSSSFSPDSSKAKLATASIFGIIDKKSKIDPSDESGTTLDCVKGEIELRHTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIKRLQLKWLRHQMGLVSQEPVLFNETIRANIAYGKRGDATEAEIIAAAEMANAHRFISGLQQGYDTVVGERGLQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERIVQDALDRVMVDRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSSATV 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0556 1270 MobiDBLite consensus disorder prediction 663 691 - -
Lal13g0556 1270 Gene3D - 399 655 IPR027417 -
Lal13g0556 1270 Pfam ABC transporter transmembrane region 146 352 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0556 1270 Pfam ABC transporter transmembrane region 53 126 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0556 1270 Pfam ABC transporter transmembrane region 728 1000 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0556 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 718 1033 - -
Lal13g0556 1270 SUPERFAMILY ABC transporter transmembrane region 32 126 IPR036640 GO:0005524|GO:0016021
Lal13g0556 1270 CDD ABC_MTABC3_MDL1_MDL2 401 639 - -
Lal13g0556 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 729 1015 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0556 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0556 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1262 IPR003439 GO:0005524
Lal13g0556 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 362 - -
Lal13g0556 1270 PANTHER - 146 1266 - -
Lal13g0556 1270 PANTHER - 20 114 - -
Lal13g0556 1270 MobiDBLite consensus disorder prediction 643 662 - -
Lal13g0556 1270 MobiDBLite consensus disorder prediction 1 32 - -
Lal13g0556 1270 Pfam ABC transporter 1044 1193 IPR003439 GO:0005524
Lal13g0556 1270 Pfam ABC transporter 421 568 IPR003439 GO:0005524
Lal13g0556 1270 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 20 114 - -
Lal13g0556 1270 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 146 1266 - -
Lal13g0556 1270 Gene3D ABC transporter type 1, transmembrane domain 145 1024 IPR036640 GO:0005524|GO:0016021
Lal13g0556 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 401 637 IPR003439 GO:0005524
Lal13g0556 1270 SMART AAA_5 428 620 IPR003593 -
Lal13g0556 1270 SMART AAA_5 1052 1245 IPR003593 -
Lal13g0556 1270 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524
Lal13g0556 1270 MobiDBLite consensus disorder prediction 643 691 - -
Lal13g0556 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1263 IPR027417 -
Lal13g0556 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 639 IPR027417 -
Lal13g0556 1270 ProSitePatterns ABC transporters family signature. 540 554 IPR017871 GO:0005524
Lal13g0556 1270 SUPERFAMILY ABC transporter transmembrane region 148 382 IPR036640 GO:0005524|GO:0016021
Lal13g0556 1270 SUPERFAMILY ABC transporter transmembrane region 709 1034 IPR036640 GO:0005524|GO:0016021
Lal13g0556 1270 Coils Coil 635 655 - -
Lal13g0556 1270 MobiDBLite consensus disorder prediction 15 32 - -
Lal13g0556 1270 Gene3D - 1028 1269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0556 Lal-Chr13 3626088 3632591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0556 16 1269 Calmodulin-binding Proteins AT2G36910 41.507 0.0 979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0556 13 3626088 3632591 Lal13g0556 13 3626088 3632591 ECH
Lal12g0546 12 3900480 3906265 Lal13g0556 13 3626088 3632591 LSH