Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0555 ATGGCTTCAGATAATGGCCTTGATGAGGCCACAACATCAAATAATCCTCCTTCAGAAAACACACATGATGAAAAGAGCAAACAAAAAGAGAAACCTGAGACTGTTCCATTTCACAGGCTTTTCTCTTTTGCAGACTCAACTGATATTCTTTTGATGACTGTTGGAACCATTGGTGCTATTGGAAATGGTTTAGGTTTGCCTCTCATGACATTATTGTTTGGTCAAATGATTGATACCTTCGGAAGTATCCAGAGAACAGACCATGTAGTAGGAGAAGTTTCCAAGGTCTCTCTCAAATTTGTGTGCTTGGCTATAGGAACTGGTTTGGCATCATTCCTCCGTAAGCATATAGTATATTTACCAATCGAAAATGTGATTTCAACAATTGATATAGACAATATCTCGCCATACCTTATAGTTTCTGAGAAAAAGGACACTGAGATTGAGAGAATGATTTCATTTTTTCCAGAGGTATCTTGCTGGATGGTCACGGGGGAGAGACAGGCTGCAAGAATAAGAGGATTGTATTTGAAAACTATACTAAGACAAGATGTCGCTTTCTTTGATAAGGAAACAAACACTGGAGAGGTGATAGGGAGAATGTCAGGTGACACTGTTCTTATCCAAGATGCAATGGGAGAGAAAGTTGGCAAGTTTCTGCAGCTAGTTGCAACATTCATTGGAGGCTTTGTGATAGCATTTGTCAAAGGATGGCTTCTTACCGCTGTAATGATGACCACTCTTCCACTTCTTGTTCTCTCCGGTGCTGCCATGGCAGTCATCATGGGAAGGATGACTTCTGAAGGTCAAACAGCTTATGCAAAAGCCGCTCATATAGTTGAACAGACAATTGGCTCAATTAGAACTGTATGTTGCTATTAA 882 0.4025 MASDNGLDEATTSNNPPSENTHDEKSKQKEKPETVPFHRLFSFADSTDILLMTVGTIGAIGNGLGLPLMTLLFGQMIDTFGSIQRTDHVVGEVSKVSLKFVCLAIGTGLASFLRKHIVYLPIENVISTIDIDNISPYLIVSEKKDTEIERMISFFPEVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLVATFIGGFVIAFVKGWLLTAVMMTTLPLLVLSGAAMAVIMGRMTSEGQTAYAKAAHIVEQTIGSIRTVCCY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0555 293 MobiDBLite consensus disorder prediction 1 19 - -
Lal13g0555 293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0555 293 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 155 292 - -
Lal13g0555 293 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 19 114 - -
Lal13g0555 293 SUPERFAMILY ABC transporter transmembrane region 151 292 IPR036640 GO:0005524|GO:0016021
Lal13g0555 293 PANTHER - 19 114 - -
Lal13g0555 293 PANTHER - 155 292 - -
Lal13g0555 293 MobiDBLite consensus disorder prediction 1 32 - -
Lal13g0555 293 Gene3D ABC transporter type 1, transmembrane domain 52 293 IPR036640 GO:0005524|GO:0016021
Lal13g0555 293 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 293 - -
Lal13g0555 293 SUPERFAMILY ABC transporter transmembrane region 32 126 IPR036640 GO:0005524|GO:0016021
Lal13g0555 293 Pfam ABC transporter transmembrane region 53 129 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g0555 293 Pfam ABC transporter transmembrane region 153 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0555 Lal-Chr13 3611323 3619804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0555 16 293 Calmodulin-binding Proteins AT2G36910 30.466 2.24e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0555 K05658 - gmx:100777909 374.4