Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0553 ATGAAGGGAAACATAATTGTCTCTATTGTTTCCCTCATCCTTGTGGTGGGTGTTGTGATAGCCAACATTGTTATCAACCATAAGGGCAGCAGTAGCACAAACCCTCATGTTAACGTTAATTCAAAGGTGGAGAAAATTTGCCAAAGTGCAGAGCAAAAAGACCTTTGTGTTCAAACCCTAAGCACAGTGAAGGAAGCCTCTGACCCTAAAGAATATGTTGCAGCAATTGTAAAAGCAACCACTGAGAGCGTCATCAAGGCCTATAACATGAGCGACAAGCTATTAGTGGAACATGGAGACAAGGACCAAGGTATCAAGATAGCCCTGGACCATTGCAAGGACATGTTGCAATTTGCATTAGACAGCCTTCAGCTTTCAACGGACTTGGTTGGTGGAAAAGACATTAAACAAGTGCATGACCAATCCGCTGACTTCAGGAACTGGTTGACTGCTGTTATCTCATACCAGCAAACTTGCTTGGATATATTTGACAATGACAAAGATGATGAGAAAGCAGTGAAGGAACTTCTCAACAATGAAAATTTGGACCATGTAAGTAAAATCACCGGTGTTGCCCTCGACCTTGTGGCTGATTTGCCAAAGATCCTTCAACAATTCGGATTGCAGTTGGAATTGAAACCTTCCTCTCGCCGCCTTCTCGGTGAGGAGGAGGTTGACGGAGAAGGACTCCCGACATGGTTGTCTGCCTCCGATCGCAAGCTCTTGGCTAAGGTCAGGATGAACAAGAAAGTTAATAAAAATGGAAAGAAGATGGTTGGTAAGGTTGCTGCTGGAGCTGCTATAGGAAAATATATAGGTGACAGTAATATCACTATTTCTGGCGTTGCAGCACCAATGACAACCGTTATGGTGGCCAAGGATGGAAGTGGCCAATTTAGAACCATTAAGGAAGCCATTGACGCTTATCCTAAGGGCTTAGAAGGCAGGTATGTTATCCATATTAAGGCTGGGGTCTATCATGAGTACATCATTGTTCCCAAACATGCTGTGAATATTCTTATGTATGGTGATGGCCCTTTAAACACTGTTATCACTGGTCACAAGAACAAACATCTCGATGGTATCGACATCATAAGGGGTGCAACATTTGCCAATGATGCTTATGGATTTATTGCCAAGGGAATTAAATTCGAGAACAATGCTGGCCCAGAGGGACATCAAGCTGTGGCAGTGAGAAACCAAGGAGATATGTCAGCCTTCTTCAATTGTCACATAGTGGGTTACCAAGACACTTTGTGGGTACAAGCCAATCGTCAATTCTATCGTAACTGTGAAATTTCTGGCACCATTGACTTCATCTTTGGTACATCAGCCACCATGATCCAAGACTCCAAAATCATTGTGAGGAAGCCCAACATCATCATGAAACAAGTAAATGTAATCACAGCAGACGGCACAGAACAAAGGAGCATGAATTCAGGAATTGTGCTCCAGGGCTGTGAGATTATCCCAGAAGCTGATTTGTTAGCAGTAAAATCTGAAATAAAATCATACTTGGGTAGGCCCTGGAAGGCTCTAGCAAGGACAGTGATCATGGAATCAAATATTAGTGAAATTATTCAACCAGAGGGATGGATATATCACCCTGATCATGTTGGGTTCCTTAATACTTTGTACTATGCTGAGTATGGTAACAGTGGAGTTGGTGCTAACCTTAAGGAAAGAGTGAAGTGGATAGGTTACCATCCAACAATTAGTACTAATGAAGCTCATAGATACACTGCTAGACAGATACTTCAAGCTGGACCAACTAGCAAAGCCCAAGACTGGTTGAAAGCTACTGGCATTCCTTTTACCCTTGGATTCCGCAAGTGA 1836 0.4286 MKGNIIVSIVSLILVVGVVIANIVINHKGSSSTNPHVNVNSKVEKICQSAEQKDLCVQTLSTVKEASDPKEYVAAIVKATTESVIKAYNMSDKLLVEHGDKDQGIKIALDHCKDMLQFALDSLQLSTDLVGGKDIKQVHDQSADFRNWLTAVISYQQTCLDIFDNDKDDEKAVKELLNNENLDHVSKITGVALDLVADLPKILQQFGLQLELKPSSRRLLGEEEVDGEGLPTWLSASDRKLLAKVRMNKKVNKNGKKMVGKVAAGAAIGKYIGDSNITISGVAAPMTTVMVAKDGSGQFRTIKEAIDAYPKGLEGRYVIHIKAGVYHEYIIVPKHAVNILMYGDGPLNTVITGHKNKHLDGIDIIRGATFANDAYGFIAKGIKFENNAGPEGHQAVAVRNQGDMSAFFNCHIVGYQDTLWVQANRQFYRNCEISGTIDFIFGTSATMIQDSKIIVRKPNIIMKQVNVITADGTEQRSMNSGIVLQGCEIIPEADLLAVKSEIKSYLGRPWKALARTVIMESNISEIIQPEGWIYHPDHVGFLNTLYYAEYGNSGVGANLKERVKWIGYHPTISTNEAHRYTARQILQAGPTSKAQDWLKATGIPFTLGFRK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0553 611 Pfam Pectinesterase 289 587 IPR000070 GO:0030599|GO:0042545
Lal13g0553 611 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Lal13g0553 611 SUPERFAMILY Pectin lyase-like 284 607 IPR011050 -
Lal13g0553 611 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 191 IPR006501 GO:0004857
Lal13g0553 611 CDD PMEI-like_3 46 201 - -
Lal13g0553 611 Pfam Plant invertase/pectin methylesterase inhibitor 43 194 IPR006501 GO:0004857
Lal13g0553 611 PANTHER PECTINESTERASE 7 246 - -
Lal13g0553 611 PANTHER PECTINESTERASE 284 609 - -
Lal13g0553 611 Gene3D - 283 609 IPR012334 -
Lal13g0553 611 SMART PMEI_2 38 195 IPR006501 GO:0004857
Lal13g0553 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Lal13g0553 611 PANTHER PECTINESTERASE 7 246 - -
Lal13g0553 611 PANTHER PECTINESTERASE 284 609 - -
Lal13g0553 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 199 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0553 Lal-Chr13 3597638 3600108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0553 1 609 Carbohydrate Esterase AT2G47040 36.406 6.70e-123 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0553 K01051 - gmx:100775246 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0553 13 3597638 3600108 Lal13g0553 13 3597638 3600108 ECH
Lal12g0545 12 3895575 3897775 Lal13g0553 13 3597638 3600108 LSH
Lal13g0553 13 3597638 3600108 Lal5g0211 5 1823934 1826219 PCT