Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0552 ATGAAAGGAAAGATAATTGTCTCTGCTGTTTCTCTCATCCTTGTTGTAGGTGTTGTGATAGGTGCAGTTGTCATCAACCACAACAATGGCACCACAAACACTGATCTAAAAGCTAATGTGAAGGCCGCTGAGAAGATCTGCCAAAGTGCAGAGCAAAAAGAGCTTTGTGTTCAAACCCTAGGCACCGTGAAGGAGACCTCAGACCCTAAAGAATACGTAGCAGCGGTTTTGAAAGCAAGCACAGAGAGTGTCATCAAGGCCTTCAACATGAGCGACAGGCTCGTAGTGGAACATGGAAACAAAGGCGAAGGTATCAAAATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCCGCATTGGAAAGCCTTCAGCTCTCAACTGACTTGGTTGGTGGAAATAATGTTAAACAAGTGCATGACCAAACTGCTGATTTCAGGAATTGGTTAACTGCTGTTATCTCATACAAACAAGCTTGTTTGGAAGGGTTTGATGATGGAAATGAGGGTGAGAAAGCAGTGAAGGAACTATACAAGACTGACAGTTTGGACCATATAGGTAAAATCACTGGTGTTGCCCTTGACCTTGTGGCTGATTTATCAAACATCCTTAAAGAATTCGGGTTGCAGTTGGATTTGAAACCTTCATCTCGCCGCCTTCTCGGTGCGGAGGAGATCGACGAAGAAGGACTCCCCACCTGGTTGTCCGCCTCCGATCGCAAGCTCTTGGCTAAGGTTGGCAAGAAGGGTGGTAAGAAAAAATTTGGTGGCAAAAAGGGTAAGGGTAAAGGTAAAGGTAAAGGTAAGGGTAAGGCTGCTTCTGGAGCTGCTGCAGGAGCGGCTGCTGGAGCTGCCGTCGGTGTGGGTGCAGGTGCCGGTATTGCTGCGGCTTCAGGACCAGCTGCAAGAACCATTGTGGTGGCCAAGGATGGCAGTGGCCAATTTAGAACCGTTAAGGAAGCCATTGATGCTTACCCTAAGGGCTTGCAAGGGAGATATGTTATCTTTGTTAAGGCTGGGGTCTATGATGAGTACATCACTGTTCCCAAGTATGCAGCAAATATCCTTATGGTTGGTGATGGCCCTTATAAGACCATTATCACTGGTAGAAAGAACTTTGCTCTTGCTGGTATCAAAACCATGATGACTGCCACATTTGCCAACACTGCACCTGGATTCATTGCAAAGGGAATTACATTCGAGAACACTGCTGGTATTGATGGACACCAAGCTGTTGCACTCAGAAACCAAGGAGATATGTCAGCCTTCTTCGATTGCCACATAGTTGGTTATCAAGATAGTTTGTATGTTCAAACCAATCGTCAATTCTACCGTAACTGTGAGATCTCTGGTACTATCGACTTCATCTTTGGTACATCAGCCACCTTGATCCAAAACTCAAGAATCATTTGCAGAAAGCCCAAAGCAAGCCAATTTAACACAATCACTGCAGATGGCACAGAACATAGAACCATGAATTCAGGAATTGTGCTCCAGGGTTGTGATATTGTTGCAGAGGCTGGTCTTGTCCCATCTCAAAACCCATCCTACTTTGGTAGGCCATGGAAGGCATATTCCACAGCAGTGGTTATGGAATCAAATATTGGTGGGTTTATGCATCCAGAGGGATGGAAAGAATGGGAAGGTGCACCAGGAGGGTTCACTGGTACCTTGTACTTTGTTGAGTATGCCAACACTGGACCTGGTTCCAACGTTGCTGGAAGAGTGAAGTGGAACACTTTGCATACAAGAATTAGTCCTCAAGAAGCTGCTAAATACACTGCTGGTCAGTTTCTTGCAGCTGGACCTGCTAGCAAAGCTGAGGATTGGTTGAAAGCTACTGATGTTCCTTTTGCCCTTGGCTTCACCAAGTGA 1872 0.4583 MKGKIIVSAVSLILVVGVVIGAVVINHNNGTTNTDLKANVKAAEKICQSAEQKELCVQTLGTVKETSDPKEYVAAVLKASTESVIKAFNMSDRLVVEHGNKGEGIKMALDDCKDLLQSALESLQLSTDLVGGNNVKQVHDQTADFRNWLTAVISYKQACLEGFDDGNEGEKAVKELYKTDSLDHIGKITGVALDLVADLSNILKEFGLQLDLKPSSRRLLGAEEIDEEGLPTWLSASDRKLLAKVGKKGGKKKFGGKKGKGKGKGKGKGKAASGAAAGAAAGAAVGVGAGAGIAAASGPAARTIVVAKDGSGQFRTVKEAIDAYPKGLQGRYVIFVKAGVYDEYITVPKYAANILMVGDGPYKTIITGRKNFALAGIKTMMTATFANTAPGFIAKGITFENTAGIDGHQAVALRNQGDMSAFFDCHIVGYQDSLYVQTNRQFYRNCEISGTIDFIFGTSATLIQNSRIICRKPKASQFNTITADGTEHRTMNSGIVLQGCDIVAEAGLVPSQNPSYFGRPWKAYSTAVVMESNIGGFMHPEGWKEWEGAPGGFTGTLYFVEYANTGPGSNVAGRVKWNTLHTRISPQEAAKYTAGQFLAAGPASKAEDWLKATDVPFALGFTK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0552 623 SMART PMEI_2 38 195 IPR006501 GO:0004857
Lal13g0552 623 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 174 IPR006501 GO:0004857
Lal13g0552 623 Coils Coil 33 53 - -
Lal13g0552 623 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Lal13g0552 623 CDD PMEI-like_3 46 201 - -
Lal13g0552 623 Pfam Plant invertase/pectin methylesterase inhibitor 44 193 IPR006501 GO:0004857
Lal13g0552 623 Pfam Pectinesterase 304 599 IPR000070 GO:0030599|GO:0042545
Lal13g0552 623 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 196 IPR035513 -
Lal13g0552 623 SUPERFAMILY Pectin lyase-like 299 617 IPR011050 -
Lal13g0552 623 MobiDBLite consensus disorder prediction 248 267 - -
Lal13g0552 623 PANTHER PECTINESTERASE 3 250 - -
Lal13g0552 623 PANTHER PECTINESTERASE 299 621 - -
Lal13g0552 623 PANTHER PECTINESTERASE 299 621 - -
Lal13g0552 623 PANTHER PECTINESTERASE 3 250 - -
Lal13g0552 623 ProSitePatterns Pectinesterase signature 2. 448 457 IPR033131 -
Lal13g0552 623 Gene3D - 298 621 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0552 Lal-Chr13 3593171 3595285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0552 1 621 Carbohydrate Esterase AT2G47040 36.295 1.49e-123 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0552 K01051 - gmx:100775246 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0544 12 3890751 3892787 Lal13g0552 13 3593171 3595285 LSH
Lal5g0212 5 1829651 1832106 Lal13g0552 13 3593171 3595285 PCT
Lal18g0398 18 3380160 3382263 Lal13g0552 13 3593171 3595285 PCT