Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0550 ATGAGTTGTTTCAACTGTTGCGAAGAGGATGAATACAACAAGGCTGCTGAAAGTGGAGGACCATATGTCGTGAAAAATGCTGCAGGAAATGATGGGAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAGACTGTTAAAGTTCAGCCCATTGAAGTTCCTTCTATACCAGCAGATGAACTAAAAGAAGTTACAGATAACTTTGGGCAAGATTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGCATTCTTAAAAGTGGGCAAGCTGCAGCAATCAAGAAATTAGATTCAAGTAAACAGCCCGACCAGGAATTTTTAGCACAGGTTTCAATGGTATCAAGGCTAAAACATGAAAACTTTGTCCAGTTGCTGGGTTACTGTGTTGACGGAAACTCTCGTATTCTTGCTTATGAGTTTGCATCTAATGGATCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAACCTGGCCCTGTTTTAACATGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCTCACATTATTCACCGGGATATCAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCGGACATGGCTGCACGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTTCTTCTGGAACTTTTGACTGGAAGGAAACCCGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAGACTCAGTGAGGACAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTTAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCACGACCTGGACCTGCTGGTGAAACACCAAATTAA 1086 0.4236 MSCFNCCEEDEYNKAAESGGPYVVKNAAGNDGNYHASETAKQGAQTVKVQPIEVPSIPADELKEVTDNFGQDSLIGEGSYGRVYYGILKSGQAAAIKKLDSSKQPDQEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0550 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Lal13g0550 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0550 361 CDD STKc_IRAK 75 348 - -
Lal13g0550 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Lal13g0550 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Lal13g0550 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Lal13g0550 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0550 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal13g0550 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Lal13g0550 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lal13g0550 361 PIRSF ILK 11 352 - -
Lal13g0550 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0550 Lal-Chr13 3582575 3588379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0550 60 346 Receptor kinase-like Gene Family AT4G02010 52.234 2.30e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lal13g0550 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0550 K13436 - gmx:100808383 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0550 13 3582575 3588379 Lal13g0550 13 3582575 3588379 ECH
Lal13g0550 13 3582575 3588379 Lal24g0445 24 3129428 3135716 LSH
Lal3g1405 3 19970298 19974749 Lal13g0550 13 3582575 3588379 PCT
Lal18g0401 18 3399421 3404048 Lal13g0550 13 3582575 3588379 PCT
Lal13g0550 13 3582575 3588379 Lal3g1405 3 19970298 19974749 PCT
Lal13g0550 13 3582575 3588379 Lal18g0401 18 3399421 3404048 PCT