Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0549 ATGGAAGCTAGATTTGGAACAGAAGCATATAATTATTATGGTATAGGTGATGGCTCCACTGATTTGAGAGGTTTGGGGAAGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTATTTTTAGCCAGCCGGTTGAATCCGGCGGTGGCTGGTGGTGTGGATGGGCAGCAGTTTTTCCCTCTTGAGTCAAGGATCCCTGTTCCCGCGGTTGGGGGTTCTGGTTCCCCCAACAGTTCTTCTTCCTGTTATGAGGAACCAGATCTTGAGAATAAAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTTATTGTGTTGGAGGATGGTGGTTTTGATGAAGAAGCAGGTGCCCTTAGCTTAAAGCTTGGAGGCCATGGAAAACCTTTGGCCAATAGGGAGATCGCAAGCTGGGATGGTGTCAATGGCAAGAAAAGCAGAGTGGGTGGAGGTACTTCGAATCGAGCCATTTGTCAGGTGGAAGATTGTGGTGCAGATCTGACCAAAGCTAAAGATTATCACCGGCGCCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTATGGCGCTTGTGGGAAATACAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTACCAGAGTTTGATGAAGGGAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCATAATAAACGTAGAAGGAAAACAAATGAGGAAGCTGTTCCAAATGGAAGTACACTCAATGATGAACACACTAGCAGTTATCTGTTGATAAGATTATTGAAGATTCTTTCAAATATGCATACTGACAGGTCAAATCAGACTACGGATCAGGATGTACCAGAGAATTTGTCGAAAGAAGGGGGTTCATCTGGGAAGTCAGAGATGGTTTCAACATTATTCTCCAATGGTACTCAAGGCTCTCCAACTGCTATAAGGCAACATCAAACGTTATCTATGAGTACAATGCAACAACAAGTGATGCTTACACGTGATGTTAGGGTTATTGATCACCAAGCTATATCATCTACTAAGCCCAGCATTACAAACAGCCCTCCATCTTCCTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTTAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGACAGCACAGAAGATCTAGAAAGATTGCCCATCTCTACAAATCAAGGGACTAGCTCTCTTGACTACCCGTGGGCACACCAAGTTTCTCATCAATTAAGTCCACCTCAAACAAGTAGAAATTCAGATTCTGCATCTGCCCATTCCCTTTCTAGTTCTAGTGGAGAAGCACAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATAGAGAGCTATATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGCCAGGACGAGGCTGTGTGGGATGAACTTTGCTACAATCTGAGTTCCAATTTGAATAGGCTGCTGAATGTCTCAGAGGATTCTTTTTGGAGAACCGGATGGGTTCACATCAGGGTGCAGCATCAAATAGCCTTCATTTTCAATGGTCAAGTTGTCATAGATAAATCCCTAACTTTCAAAGGTAACAATTATAGCAAGATTTTGAGTGTCAGTCCAGTTGCTGTACCAGCATCGAAACAAGCTCAATTTTCTGTTAAGGGTGTCAACCTTATAGGCTCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTCTCTGTGAAGATGCTCATGAGTCAATCGATCAACACTCTAAGGAGCTTGATGAGATCCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGTTTTTTTCCTTTTATAGTGGTCGAGGAGGATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTATTAGAATTCAGTGAAACTGATCCAGATACTAATGGGACGGGAAAAATTGAAGCCAAAAGTCAAGCCATGGATTTCATTCATGAAATTGGTTGGCTTCTTCACAGAAACCAAATGAAATCTAGGATGGTTCACTTGAACTCAAGTGCAGAACTCTTTCCATTAAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATTGAACCTGATGCTTGACGGAACTGTGAGTTCAGGAGATCACCCTTCCTTGTATCTTGCACTTTCAGAGATGACCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTAGAGTTGCTTTTGAGGTATGTTCCTGATAAATTTGGAACTGAAGACAAGGCATTACTTGGTGGAGAGAATAAGAGCTTCTTTTTTAAACCTGATGTTGCTGGTCCCGCTGGTTTAACACCTCTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATCAAAGCGTGGAAGAGTGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGATTGCGTGGCCATTATACTTACATTCACTTAGTGCAGAAGAAAATTAATAAGAAACAAGGAGCACCACATGTGGTGGTTAATATTCCCAGCACTGTGACAGAAAGCACTACAAACCAGAAGCAAAATGAGTCATCAACAACCTTCGAGATCGGAAAGGCTCAAGTAAAACGTGGCCAAGGTCTCTGCAAAGTTTCCCCTCATTCTCAGACAGAAGCTTATCGTCCTGAATCAATACTAACTAAAACAATCAATTTATTTCACCTAAAAATGGGAGGAAGCTCCAATTTCAAGGACGAGTATACCTTTGAACAAAGGCTTGATGAATCGCGCGATATTGTGGCCAAATACCCCGATCGAGTTCCCGTGATTGTGGAAAGATATGTGAAATGCGACCTGCCTGAGTTGGAGAAGAAAAAATACCTTGTTCCCCGAGACGTGTCTGTTGGGCATTTCATTCATATTTTGAGTTCCAGACTTACTCTGCCTCCTGGAAAAGCTCTGTTTGTATTTGTGAAGAATACCTTGCCTCAAACTGCTAGCATGATGGACTCTGTTTATGAATCATTCAAGGATGGGGATGGATTTCTGTACATGTACTATAGCACTGAGAAAACCTTTGGCTAA 3213 0.4283 MEARFGTEAYNYYGIGDGSTDLRGLGKRSTEWDLNEWRWDGDLFLASRLNPAVAGGVDGQQFFPLESRIPVPAVGGSGSPNSSSSCYEEPDLENKKGNKEGERKRRVIVLEDGGFDEEAGALSLKLGGHGKPLANREIASWDGVNGKKSRVGGGTSNRAICQVEDCGADLTKAKDYHRRHKVCEVHSKATMALVGNTMQRFCQQCSRFHLLPEFDEGKRSCRRRLAGHNKRRRKTNEEAVPNGSTLNDEHTSSYLLIRLLKILSNMHTDRSNQTTDQDVPENLSKEGGSSGKSEMVSTLFSNGTQGSPTAIRQHQTLSMSTMQQQVMLTRDVRVIDHQAISSTKPSITNSPPSSSEARDSSAGQVKMNNFDLNDIYIDSDDSTEDLERLPISTNQGTSSLDYPWAHQVSHQLSPPQTSRNSDSASAHSLSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAVWDELCYNLSSNLNRLLNVSEDSFWRTGWVHIRVQHQIAFIFNGQVVIDKSLTFKGNNYSKILSVSPVAVPASKQAQFSVKGVNLIGSATRLICALEGKYLLCEDAHESIDQHSKELDEIQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICLLEPLLEFSETDPDTNGTGKIEAKSQAMDFIHEIGWLLHRNQMKSRMVHLNSSAELFPLKRFKWLMEFSMDHDWCAVVKKLLNLMLDGTVSSGDHPSLYLALSEMTLLHRAVRRNSKQLVELLLRYVPDKFGTEDKALLGGENKSFFFKPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIKAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKKQGAPHVVVNIPSTVTESTTNQKQNESSTTFEIGKAQVKRGQGLCKVSPHSQTEAYRPESILTKTINLFHLKMGGSSNFKDEYTFEQRLDESRDIVAKYPDRVPVIVERYVKCDLPELEKKKYLVPRDVSVGHFIHILSSRLTLPPGKALFVFVKNTLPQTASMMDSVYESFKDGDGFLYMYYSTEKTFG 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0549 1070 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 19 929 - -
Lal13g0549 1070 MobiDBLite consensus disorder prediction 270 309 - -
Lal13g0549 1070 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 929 IPR044817 GO:0003677
Lal13g0549 1070 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Lal13g0549 1070 MobiDBLite consensus disorder prediction 408 435 - -
Lal13g0549 1070 SUPERFAMILY Ubiquitin-like 957 1070 IPR029071 -
Lal13g0549 1070 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Lal13g0549 1070 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Lal13g0549 1070 MobiDBLite consensus disorder prediction 73 100 - -
Lal13g0549 1070 Pfam SBP domain 161 234 IPR004333 GO:0003677
Lal13g0549 1070 MobiDBLite consensus disorder prediction 225 247 - -
Lal13g0549 1070 Gene3D - 943 1070 - -
Lal13g0549 1070 MobiDBLite consensus disorder prediction 339 365 - -
Lal13g0549 1070 Pfam Autophagy protein Atg8 ubiquitin like 967 1070 IPR004241 -
Lal13g0549 1070 SUPERFAMILY Ankyrin repeat 744 874 IPR036770 -
Lal13g0549 1070 Gene3D - 734 890 IPR036770 -
Lal13g0549 1070 SMART ANK_2a 814 844 IPR002110 GO:0005515
Lal13g0549 1070 SMART ANK_2a 761 790 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0549 Lal-Chr13 3569087 3578478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0549 1 938 SBP-box Gene Family AT3G60030 51.817 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal13g0549 Atg8 6.9e-41 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0549 - - lang:109336004 1686.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0549 13 3569087 3578478 Lal13g0549 13 3569087 3578478 ECH
Lal12g0543 12 3880615 3887250 Lal13g0549 13 3569087 3578478 LSH
Lal13g0549 13 3569087 3578478 Lal24g0444 24 3116054 3122216 LSH