Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0547 ATGGTGGCTGATGCGGAGCTTGTGTATCAACAGAGCATGACTATGTTGGATGTGAAGTATTTTCCAAACAAAGAGAGTAAAATTCATGAGATCGAAGGTGGAGATTCTGTTTCACCTCCAAATTTTGACCGAGTTCGTGCTTCTGAGTTAGTCTCGGCCGAGTTATCTACTTCACAAGAAGATGTTAAGCCTGGTGAGAGAATTGCAGATGCGGCTCCGGAATCTGCTGTTGTGCAATATGTTCCCTGCATTCGTTCGGGTAGTTTTGTTGACATCGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCTCACCTGGGATTACTATACAATTTCCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCAGAAGCTGCAGCTTATATAAGGAAAAATGTGATGAAGTTCTTTTTTGAGGATGTCAACTTCCCACAGACATCTGAAATTGATAGTGCATTTTTACAAGAGCTTGAGAATTCCCTGACGGAGTCATTTCTTTTAGCTGATTCAGCTTTGGCAGATGATTGTAATGTGAACAGTTCATCAGGGACCACAGCCCTTACCGCTTTGATATTCGGAAGGCTTCTAATGGTGGCCAATGCTGGAGACTGCCGAGCAGTTCTCTGTCGTAAAGGGGAGGCCATTGACATGTCTCAAGATCACAGACCTATTTACCCATCAGAACGGATGCGAGTTGAAGAATTGGGTGGTTTCATAGATGATGGTTATCTTAATGGGGTCTTATCCGTTACTCGAGCATTAGGGGACTGGGACATGAAGTTACCTAAGGGTTCATCCTCACCTTTGATCGCAGAGCCTGAGTTTCGGCAAGTTATTCTGTCTGAGGATGATGAATTCCTCATTATGGGATGTGATGGAATCTGGGATGTGATGTCAAGCCAGCATGCTGTTGGCCTTGTTCGCAGAGGCCTGAGGCGGCATGATGACCCAGAGCAGTGTGCAAGGGACCTGGTTATGGAAGCTTTACGCCTGAACACATTTGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGATCACAGGGAGTCATCCCCACCTCGCCAGCGAAAATTGAGATCCTGTAGCCTCTCTGCAGAGGCACTTTGTAACTTGAGAAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1185 0.4532 MVADAELVYQQSMTMLDVKYFPNKESKIHEIEGGDSVSPPNFDRVRASELVSAELSTSQEDVKPGERIADAAPESAVVQYVPCIRSGSFVDIGPRRYMEDEHIRIDDLSSHLGLLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVMKFFFEDVNFPQTSEIDSAFLQELENSLTESFLLADSALADDCNVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERMRVEELGGFIDDGYLNGVLSVTRALGDWDMKLPKGSSSPLIAEPEFRQVILSEDDEFLIMGCDGIWDVMSSQHAVGLVRRGLRRHDDPEQCARDLVMEALRLNTFDNLTVIIVCFSSLDHRESSPPRQRKLRSCSLSAEALCNLRSLLEGSASN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0547 394 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Lal13g0547 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Lal13g0547 394 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Lal13g0547 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Lal13g0547 394 CDD PP2Cc 84 355 IPR001932 -
Lal13g0547 394 Gene3D - 73 362 IPR036457 -
Lal13g0547 394 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Lal13g0547 394 SMART PP2C_4 75 353 IPR001932 -
Lal13g0547 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Lal13g0547 394 SMART PP2C_SIG_2 100 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0547 Lal-Chr13 3563419 3566051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0547 98 390 PP2C-type Phosphatase Gene Family AT3G62260 68.027 3.43e-149 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0547 K14803 - gmx:100819791 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0547 13 3563419 3566051 Lal13g0547 13 3563419 3566051 ECH
Lal13g0547 13 3563419 3566051 Lal24g0441 24 3107380 3109946 LSH