Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0544 ATGGACACAGACTACACAAAGAGTGTTCACATGATGAGGACTTTATCAGATTGTGGTTCATCAGCAGCATATACAAACGAAGAAGTTGTGGTAATGAAGAAAGGTCCATGGACAGCGGAAGAAGATTCTGTTCTAATAAACTACGTCAACGTTCACGGTGAAGGTCTAAAGCGAACTGGCAAAAGCTGCAGATTAAGATGGTTAAACTACTTACGTCCAAATGTTCGACGTGGGAACATCACCCTCCATGAACAGCTCTTGATTCTTGACCTTCATTCCCGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAACTACCCGGGAGAACCGACAATGAGATAAAGAACTATTGGAGGACGAGAGTAGTAAAGCATGCAAAGCAACTGAAGTGTGATGTAAACAGCAAGAAGTTCAGGGACACCATGCGTTTTGTATGGATGCCTCGTCTCATGGAGCAGATTCAAGCCTCTAATTTTGGCAGACAAGGGCAAATAACTACTCTTTGCAACAACACTAAAGCTCACACTGAACCTTGTGTAACCATGCCAAGCATGTTGTCAGTGCCTACTTCTTCAGATAGAGTGCCTATCAATTTGATGGGTGGTGGTGGTAGTAGCTGGTCATCATTATCAGATAGTTTTGAAAAGGGATCCACATCCACCCTATGCACATCGCAGAAGAGGGAGTACTCAGAAGTTCAAGAAGTTGAACCTTGCAATGATTTTGGTGGTGTAGACATGTGGACTGATGAAAATATATGTTTCTTGCAACAGCTTCTTGCTGATGACTAA 792 0.4318 MDTDYTKSVHMMRTLSDCGSSAAYTNEEVVVMKKGPWTAEEDSVLINYVNVHGEGLKRTGKSCRLRWLNYLRPNVRRGNITLHEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKHAKQLKCDVNSKKFRDTMRFVWMPRLMEQIQASNFGRQGQITTLCNNTKAHTEPCVTMPSMLSVPTSSDRVPINLMGGGGSSWSSLSDSFEKGSTSTLCTSQKREYSEVQEVEPCNDFGGVDMWTDENICFLQQLLADD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0544 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 71 IPR017930 -
Lal13g0544 263 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lal13g0544 263 Pfam Myb-like DNA-binding domain 34 71 IPR001005 -
Lal13g0544 263 Gene3D - 32 77 - -
Lal13g0544 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lal13g0544 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 20 190 - -
Lal13g0544 263 SUPERFAMILY Homeodomain-like 32 118 IPR009057 -
Lal13g0544 263 SMART sant 33 73 IPR001005 -
Lal13g0544 263 SMART sant 76 124 IPR001005 -
Lal13g0544 263 ProSiteProfiles Myb-like domain profile. 32 122 IPR001005 -
Lal13g0544 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 190 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal13g0544 263 CDD SANT 81 120 IPR001005 -
Lal13g0544 263 Gene3D - 81 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0544 Lal-Chr13 3542404 3543428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0544 20 263 MYB Transcription Factor Family AT2G47190 46.332 3.74e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0544 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0544 K09422 - gmx:100777932 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0544 13 3542404 3543428 Lal13g0544 13 3542404 3543428 ECH