Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0537 ATGGAGAAGAAGGATATGGTAGTGAACATGGAAGCTACAATAGGGAATTCTTCTTTGCCTGGTTATAATCCATTTGGTAACGTGTTTGATTTCTGTGAAGTGGAAAAGAGCTCTTTAGGGTTTATGGAGTTATTGGGTGTTCAGGACTATGCTAATGGTCATCAGTTTCTTGATTTACCACAACAACTATCATCAACTATGTCTGTGCCTATGGTGGTTCCATATGAGACTAATGGGAAAGAGTGTAACTCTGAGGTCTTGAATCAGCAACCTGCCACTCCTAATTCCTCTTCAATTTCATCCGCGTCCACCAGTGAGGCAGTTAATGATGAACACAATAAAGCTGTAAACAAAGCAGAAGAGGGAGAAGAAGAAGAACAGAATAAGACCAAGAAACTGTTGAAGGCGAAGAAGACTAATCAGAAGAGACAGAAAGAACCAAGAGTGGCGTTCATGACGAAAAGTGAGGTAGATCATCTAGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCTGTGAAAAACAGCCCCTTCCCCAGGAGTTACTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGCGTGGAGCGTTCTTTTACTGATCCAAGCACTGTTGTCACTACATATGAAGGCCAACATACACATCCAAGTCCAGTTATTCCTCGCTCAGGCCTCACCGGAGCTCCGTTAACACCGTGTGTCTCTGCCACTGATTACTTGTCCCAGTATCAGCAGCACCACCGTCAACAACAACTCCTTTTCAATACATTGTCTTCTTCTTTGAGTTTCCCTTACAACACTTGTTTTCCTCAAGAGAGACTGGTTTGTAATCCAGGAACAACTGCTGCATTTCTAAAGGACCATGGGCTGCTTCAGGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 918 0.4303 MEKKDMVVNMEATIGNSSLPGYNPFGNVFDFCEVEKSSLGFMELLGVQDYANGHQFLDLPQQLSSTMSVPMVVPYETNGKECNSEVLNQQPATPNSSSISSASTSEAVNDEHNKAVNKAEEGEEEEQNKTKKLLKAKKTNQKRQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSTVVTTYEGQHTHPSPVIPRSGLTGAPLTPCVSATDYLSQYQQHHRQQQLLFNTLSSSLSFPYNTCFPQERLVCNPGTTAAFLKDHGLLQDVVPSHMLKEE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0537 305 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal13g0537 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 297 IPR044810 GO:0003700
Lal13g0537 305 PANTHER WRKY TRANSCRIPTION FACTOR 15 297 - -
Lal13g0537 305 MobiDBLite consensus disorder prediction 86 146 - -
Lal13g0537 305 SUPERFAMILY WRKY DNA-binding domain 152 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal13g0537 305 PIRSF WRKY_txn_fact_IIc 1 305 IPR017396 GO:0003700
Lal13g0537 305 Gene3D WRKY domain 144 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal13g0537 305 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal13g0537 305 MobiDBLite consensus disorder prediction 86 110 - -
Lal13g0537 305 MobiDBLite consensus disorder prediction 111 133 - -
Lal13g0537 305 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal13g0537 305 Coils Coil 105 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0537 Lal-Chr13 3486964 3490265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0537 27 305 WRKY Transcription Factor Family AT2G47260 48.910 3.12e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal13g0537 WRKY 1.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0537 - - lang:109353563 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0537 13 3486964 3490265 Lal13g0537 13 3486964 3490265 ECH
Lal12g0533 12 3812299 3814531 Lal13g0537 13 3486964 3490265 LSH
Lal13g0537 13 3486964 3490265 Lal24g0433 24 3079136 3080796 LSH