Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0535 ATGTTAGGAATGAACAAATTTCAAGGAGGAACAATTTCTTATGAGAGAGTGGTAATATTCAAAGAATGTATGCGCAACCACGGTGCACTTTTGGGCTTTGTTTGCCGTGATGGTTGCCTCGAATTTATCGGAGGTGGCCGGCGAGGCGACGATGATAATAAAGGAGATGCTATGATTTGTGCTACCTGTAGTTGCCACCGTAACTTCCACCGCAAAGTTATTGTATCTAAACCCATATCCAAAAGTAACAAACCAGACAACAACATTAACAGTGTTAATGCAAATCCTTCTCTTGTGTCTCGCTCCCGCATGTAA 315 0.4222 MLGMNKFQGGTISYERVVIFKECMRNHGALLGFVCRDGCLEFIGGGRRGDDDNKGDAMICATCSCHRNFHRKVIVSKPISKSNKPDNNINSVNANPSLVSRSRM 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0535 104 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 73 IPR006456 -
Lal13g0535 104 MobiDBLite consensus disorder prediction 79 104 - -
Lal13g0535 104 Pfam ZF-HD protein dimerisation region 18 74 IPR006456 -
Lal13g0535 104 MobiDBLite consensus disorder prediction 80 104 - -
Lal13g0535 104 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 91 - -
Lal13g0535 104 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 15 91 - -
Lal13g0535 104 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0535 Lal-Chr13 3471854 3472168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0535 18 88 Zinc finger-homeobox gene family AT1G18835 40.845 2.47e-13 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal13g0535 ZF-HD_dimer 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0535 - - twl:119983999 68.5514