Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0527 AAAAAAAACAGAGCAAAAACTGTGTTTGTGAGAAGAAACATGGAAGAGGTTGTGTTGTTCGTTGACGATTTGAGATTACTTTCTGGGGTTTCTCGTTGTAGAATTTGTCATGAAGAAGAATTTGAGAGCTTAAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACTGTTAAGTTTGCTCATAGAGATTGCATTCAGAAATGGTGCGATGAAAAAGGAAATACAGTTTGTGAAATATGTCTACAGAAATATGAACCTGGATATACAGCAGCTCCAAAGAAATCTCAAATATCTGATGCAGCAATGACCATTAGGGGAAGCATACAAATTTCAAGGATGGAGCAAGAACCGTTAAATGCAAGAATAGAGGGTATAGTTGAAGAAATAGCAATAGAAGACCATTACTCTGAATGCACATCTGCTGCAGATATAAGCGCTTCTTGTTGTAGATCACTGGCTTTAACTTTTACACTCATCTTGCTTGTAAGACATCTATTTGAAGTGCTTTCAAATGGAATGGAAGATTACCCATTTACAATTCTTACTGTTTTTATACTAAGGGCTAGTGGAATTATTGTACCTATGTACATAATTATTAGGACGCTAGGAGGCATTAATAAAAGTATTCAACGTCACTATCTTCAGGATTCTGACGATGACACATCAATTTTTGATGGAGATGAAGAAAATGAGATATCATATGTTGCAACTTTAAGACATTAA 723 0.3541 KKNRAKTVFVRRNMEEVVLFVDDLRLLSGVSRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQKWCDEKGNTVCEICLQKYEPGYTAAPKKSQISDAAMTIRGSIQISRMEQEPLNARIEGIVEEIAIEDHYSECTSAADISASCCRSLALTFTLILLVRHLFEVLSNGMEDYPFTILTVFILRASGIIVPMYIIIRTLGGINKSIQRHYLQDSDDDTSIFDGDEENEISYVATLRH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0527 240 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 10 230 - -
Lal13g0527 240 SUPERFAMILY RING/U-box 31 85 - -
Lal13g0527 240 SMART ringv_2 32 81 IPR011016 GO:0008270
Lal13g0527 240 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 10 230 IPR033275 -
Lal13g0527 240 Pfam Protein of unknown function (DUF3675) 86 201 IPR022143 -
Lal13g0527 240 ProSiteProfiles Zinc finger RING-CH-type profile. 25 87 IPR011016 GO:0008270
Lal13g0527 240 Pfam RING-variant domain 33 80 IPR011016 GO:0008270
Lal13g0527 240 CDD RING_CH-C4HC3_MARCH 33 80 - -
Lal13g0527 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0527 Lal-Chr13 3415963 3418500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0527 33 80 C3H Transcription Factor Family AT5G05830 38.462 4.61e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0527 - - gmx:100797029 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0527 13 3415963 3418500 Lal13g0527 13 3415963 3418500 ECH
Lal13g0527 13 3415963 3418500 Lal24g0422 24 2996090 2998936 LSH
Lal3g1369 3 19510331 19513725 Lal13g0527 13 3415963 3418500 PCT
Lal5g0235 5 2036644 2041157 Lal13g0527 13 3415963 3418500 PCT
Lal13g0527 13 3415963 3418500 Lal3g1369 3 19510331 19513725 PCT
Lal13g0527 13 3415963 3418500 Lal5g0235 5 2036644 2041157 PCT