Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0523 ATGTTAGAAACGAGTTATCCGTTGCAAGTGTTTCGTGGTGTTCATTTCGTGCTCTTCGGATTTAATCCCATTTCGGAGAGCAATGTTCGATTGAAGCTTGTAAATGGCGGTGGTGTTGATGCAGGGAAGTACGGTGTAAATTGCTCGCATGTTATCGTTGATAAGATTGCATATGATGATCCAGTGTGTGTTGCTGCGAGAAAGGATGGGAAGACACTTGTCACTGCACTATGGGTTGATCACAGTGCTGATATTGGAATGCCCGTTGATCCTGCTTCTGTTATGTACAGACCCCTAAAAGATTTAAATGGAATCCCTGGTGCACAAAAATTGATTATGTGCTTGACTGGTTATCTGCGTCAGGACCGGGATGACATTATGACAATGGTTGGCCTAATGGGTGCACACTTTTCGAAGCCATTAGTAGCAAACAAGGTTACCCATCTTATATGCTACAAATTTGAAGGGGAGAAGTATGAACTTGCCAAGAAAATGGGCACTATAAAGCTAGTCAATCATCGTTGGTTAGAAGATTGCTTGAGGGATTGGGTGCTTCTTCCAGAAGACAAATATAATAAAAGTGGCTATGAATTAGAGGCGTTGGAAGCAGAAGCTAAAGATTCTGAGGAAGAAGCTGAAGATTCCAAGCTGGGGCAATCCGGGGGGTGGAATATGAACAGAAGTCCTCTTAGTTCGAAATTTGGTCATGGATTGACAAAATCAGTAGGAGAGCCATCAAATGCCACCTCAGAACATTCTGGTCAACAGGTTTTGCCAAAAGTTGGTGAAGGCTCTATTGTTACCCCACGAAATAAGAACATATCTGATCGGGACTTAAGCTTTCGCTATATTGATAACATGAAGATAAGTGCTCAGGCTCCTGATATTTCTAGACATGCTACATCATCTCAGATGCCTGACACATATGTTAAGATCAGTGCGTCTAAAAATGCTGAGCTCTCAGATTCAATTTCATCTGGTCTGCTACCTGATCCAAATACCGGAACTTCAGTGTCTAAGAAGTTGGTTTGTGACATGAGATCCTCGACTGCAAGTGCTGAGGGACTTACACATTCAGATTCTAAATTTAATTCTACGAGTTATTCTAAAAAGAACCAAAGGAGATTTACTCTTCCAAGGAACTTAGACGAAAGCCCAGGCAATGCAACTGGACCTGCTGTGTCACCTTTGGATGATTTCAAATTTGGTAACAACCTTGAAACCTCTTCCACTAAGGTGGAAAATGCAAGTGAGGGAATAAAATCTACCTGTGTTGAAGGTTCTGGGAAAGGAAATGATTCTATTAAAGGGGATGAAGCAATTAATTTATTTCCTCAAAAGAGGATAAAGGAAGCTTCTTCTACTAAATTAAAAATAAGAAATACGACTACAGGTGCAAAATTGTCCAATGAAAGAACCCCATTATCAAATGGCAAATATCGAGCATTAGAAATGGCATCTCTGGTTGATGAACAACCTGAGGCTGATAGGTATCTCTCTGCTTGCAAAGATGGTTTAAATAACTCAAACATTTGCTCTATTTCTAAATCTGAAGCTTCTAACTCCAAGTCAATGGCGTTTGATGAGCCATTTTCAAGAAATGCAAGCTCAGAGTCCACTCAATGTAATAATGCCTGTCAGTATTCAGCACAAGCAGCTGTTCAAAGCTTATGTGAGTCTAAATTTATAGGCAAGCCTGATTTCACAGGTTTTGAAATGAGACAGGTTAATGATGGTCATGAAGCAGAGCAACATAATATCATGAAAAATCTGGATTGTTCATCACCTGATAAGAAGTCACCAAATGAGGAATTCGTTGGTCTTGTTCATATGGATTTAAGCAATGAAGAAAATGGCAAGCTGATTAGAAAGTCTCCCCACAAGAAGTCAGTTGCCAAGAAAAGTTTGGGTTCTAGACCTAAAATAGGTGATTCTGCTAAGCAGAGAAGATCAGTTTCCTTGAATGAAACTACTGTGCAAGGTGAAGGTGTAAGTATTTTTAGTGGGAGCGAAGAGATAGCAACTTGTGATGTAAAGAAGCCTCAGGCGTCCCCTGAAATCCTTAATCTTAATAAAGAAAAGGAGCAAGAGACCATTGGTAAATATGCAGAAGAAGCTGGTGGCATAACCAAATTTTTTGATGATGAAACAGAGGCTCCAGATGACAAATATGAAGATGAGTTGGGAATGTCACTTGATGAAAACAAGTCTGAATTGGTTCATTTTTCTAAAACAGTAAACACAATAAATGTGCCGTCAGAAGCAACTCACCGTATGGCAGAATACGAAGAAACAATGCCTCCAAAGAATAACACAACTGAAACAGAAAAACAGAAGCCACCTTCACTGGTTGACTCAACCTCAGAGTTAAGAGTAAAGCATAAAGCGACTAAACGTTCTGCAGTTAGAACTAAAAAGACCATAGTTACCAAGGATTTCTTGAAATCTGCAGAGGCTGTATCTGCGGAGAAGAACCAGAATGAGAGGAGACATGAGACAGAGATGGAAATCCCCAATAAAATGCCCCCCTTGGCTGATATAAGTGATCACTCAACCTCAAAGTTAGCAGTAAAGCGTCAAGCGACAAAGCGTCCTGCATGTAAAACAAAAAAGACCACAGTTGCCAAGGATTTTTCAAGATCTGAAGCGGCAGCAGGTTTGGAGAAGAATCATAATGAGAGTAAACATGAGGCAGGGATGGAAATCTCTGGAGAAATGGCCAGTGAGCGCTCATCCTCAAAGTTAGAAGTAAAGCATCAATTAAAAAAGCGTCGTGCAGGGAGAACTATGAAGTCCACAGTTGCCAAGGAGAACTGTGAAGGAGCAGTATCTGTGGACAAGATTCATTCAGAAAGGGAAAATGAGGCAGAGATGGAAATAATGGAAGAGATACCCCCTCATGCTGATTTAAGTGAGAGCCCAATCGCACCAAGAAATAAGTCAGATAATCTGATTGAAGAGGACAAGGAGAATAGACCAATTGATGGAGCAGTAGATGATGTGAAGAGCAAAAGTATTGGAAGTCGAATTATTAAATCTATTGCAAGGCCAGCAAAGGATGACTCTAAGAAAATTGGTCGTAATTCATCAATATCAGAACCTAATACAAAAGCAAAAACTGAAGCCGCATGTTTTTTAGTAAGTGGTCATCGGCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGGTTAAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACATTTCATAGTTCCAGACCCTGTACGCAGGACGGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGCACCCTGGCAGGAAAATTGTTGCCAGAGGGGCCTTATGAGTGGCACAAGAGTGGTCTCACTGAGGATGGTGCAATAAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAGAGAGAGGACAGGTCATGGTGCTTTCTATGGAATGCGCATTATTGTATATGGTGACTGCATTGCCCCACCTTTGGATACTTTGAAACGTGTGATCAAATCTGGAGATGGAACAATATTAGGCACTTCTCCTCCTTATACTCGTTTCCTTGACACTGGGGTGGACTATGCCATAGTTAGTCCTGGCATGCCACGTGTTGATGTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTTTAGCCGACTACTTGGTCGAATATGTCTGCAAACCTGGGTTCTCCCTTGAGAGACATGTACTATATGGCACTCATACTTGGGCAGAGAGGTCATATGATAAACTTCAAAGCAAGGCGGAAGAGATTGTTGAGGGGCTCATTCCTCCTAAGGATTGTGATGAGGATAATGAGGAAGAGGATACAATTTGCCAGGTATGTGGATCCGGGGATAGAGGCGATGTAATGCTGATTTGCGGTGATGAAAAGGGTTCTGTTGGTTGTGGAATTGGTACTCATATTGATTGCTGTGATCCTCCACTTACAGAAGTTCCTGAGGAGGATTGGTTTTGCCCAAAATGCAATGAAACCTCAAAGTGCTCAAGTTCATCCAAGAAAAGGAAAAAAGGTGCCATGTCATCATCCAAGAGGGAGTGA 4104 0.4147 MLETSYPLQVFRGVHFVLFGFNPISESNVRLKLVNGGGVDAGKYGVNCSHVIVDKIAYDDPVCVAARKDGKTLVTALWVDHSADIGMPVDPASVMYRPLKDLNGIPGAQKLIMCLTGYLRQDRDDIMTMVGLMGAHFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLRDWVLLPEDKYNKSGYELEALEAEAKDSEEEAEDSKLGQSGGWNMNRSPLSSKFGHGLTKSVGEPSNATSEHSGQQVLPKVGEGSIVTPRNKNISDRDLSFRYIDNMKISAQAPDISRHATSSQMPDTYVKISASKNAELSDSISSGLLPDPNTGTSVSKKLVCDMRSSTASAEGLTHSDSKFNSTSYSKKNQRRFTLPRNLDESPGNATGPAVSPLDDFKFGNNLETSSTKVENASEGIKSTCVEGSGKGNDSIKGDEAINLFPQKRIKEASSTKLKIRNTTTGAKLSNERTPLSNGKYRALEMASLVDEQPEADRYLSACKDGLNNSNICSISKSEASNSKSMAFDEPFSRNASSESTQCNNACQYSAQAAVQSLCESKFIGKPDFTGFEMRQVNDGHEAEQHNIMKNLDCSSPDKKSPNEEFVGLVHMDLSNEENGKLIRKSPHKKSVAKKSLGSRPKIGDSAKQRRSVSLNETTVQGEGVSIFSGSEEIATCDVKKPQASPEILNLNKEKEQETIGKYAEEAGGITKFFDDETEAPDDKYEDELGMSLDENKSELVHFSKTVNTINVPSEATHRMAEYEETMPPKNNTTETEKQKPPSLVDSTSELRVKHKATKRSAVRTKKTIVTKDFLKSAEAVSAEKNQNERRHETEMEIPNKMPPLADISDHSTSKLAVKRQATKRPACKTKKTTVAKDFSRSEAAAGLEKNHNESKHEAGMEISGEMASERSSSKLEVKHQLKKRRAGRTMKSTVAKENCEGAVSVDKIHSERENEAEMEIMEEIPPHADLSESPIAPRNKSDNLIEEDKENRPIDGAVDDVKSKSIGSRIIKSIARPAKDDSKKIGRNSSISEPNTKAKTEAACFLVSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIVPDPVRRTEKFFAAAASGRWILKTDFLTASTLAGKLLPEGPYEWHKSGLTEDGAINMEAPRKWRLLRERTGHGAFYGMRIIVYGDCIAPPLDTLKRVIKSGDGTILGTSPPYTRFLDTGVDYAIVSPGMPRVDVWVQEFLKHEIPCVLADYLVEYVCKPGFSLERHVLYGTHTWAERSYDKLQSKAEEIVEGLIPPKDCDEDNEEEDTICQVCGSGDRGDVMLICGDEKGSVGCGIGTHIDCCDPPLTEVPEEDWFCPKCNETSKCSSSSKKRKKGAMSSSKRE 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0523 1367 Pfam PHD-finger 1292 1345 IPR019787 -
Lal13g0523 1367 ProSiteProfiles BRCT domain profile. 1045 1127 IPR001357 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 764 802 - -
Lal13g0523 1367 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 242 256 - -
Lal13g0523 1367 SUPERFAMILY FYVE/PHD zinc finger 1278 1349 IPR011011 -
Lal13g0523 1367 SUPERFAMILY BRCT domain 110 192 IPR036420 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 351 375 - -
Lal13g0523 1367 Pfam BRCA1 C Terminus (BRCT) domain 1048 1113 IPR001357 -
Lal13g0523 1367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1255 1360 IPR013083 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 870 903 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 858 933 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 1344 1367 - -
Lal13g0523 1367 Gene3D BRCT domain 1036 1153 IPR036420 -
Lal13g0523 1367 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1343 - -
Lal13g0523 1367 SMART PHD_3 1292 1344 IPR001965 -
Lal13g0523 1367 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 766 785 - -
Lal13g0523 1367 SMART BRCT_7 1155 1242 IPR001357 -
Lal13g0523 1367 SMART BRCT_7 1036 1117 IPR001357 -
Lal13g0523 1367 SMART BRCT_7 106 183 IPR001357 -
Lal13g0523 1367 SMART BRCT_7 8 86 IPR001357 -
Lal13g0523 1367 CDD BRCT_TopBP1_rpt7 1044 1117 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 964 999 - -
Lal13g0523 1367 Gene3D BRCT domain 99 220 IPR036420 -
Lal13g0523 1367 SUPERFAMILY BRCT domain 1046 1130 IPR036420 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 351 402 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 981 999 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 202 272 - -
Lal13g0523 1367 Gene3D BRCT domain 1154 1254 IPR036420 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 1353 1367 - -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 219 235 - -
Lal13g0523 1367 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1343 IPR044254 -
Lal13g0523 1367 ProSiteProfiles Zinc finger PHD-type profile. 1290 1346 IPR019787 -
Lal13g0523 1367 Coils Coil 191 218 - -
Lal13g0523 1367 Gene3D BRCT domain 2 95 IPR036420 -
Lal13g0523 1367 MobiDBLite consensus disorder prediction 624 651 - -
Lal13g0523 1367 Pfam twin BRCT domain 111 175 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0523 Lal-Chr13 3370728 3377369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0523 129 382 Core DNA Replication Machinery Family AT4G02110 37.358 5.44e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal13g0523 BRCT 6.6e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0523 K10728 - gmx:100799144 1531.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0523 13 3370728 3377369 Lal13g0523 13 3370728 3377369 ECH