Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0518 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTTGGGTTGAAGAAAGGAAGGTGGACAGAAGAAGAAGATGACATTTTGAGAAAATATATTAAGGAAAATGGGGAAGGTTCATGGAGGTCATTGCCCAAGAATGCAGGATTACTACGGTGTGGGAAGAGTTGTAGGCTAAGATGGATTAACTACCTGAGAGGTAATCTCAAAAGAGGGAACATTTCTGCTGAAGAAGAAGATATCATTGTAAAGTTGCATGCTTCTTTCGGCAACAGATGGTCCTTGATAGCAACTCAATTGAGAGGTAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTTAGCCGCAAAATTTACAGTTTCCGGAGACCAACTATTACCACAGACATGGATCCTAAACCCATAGTAGTTATTCCTCCAAGACGTAGAGGTGGTAGAACTAGCCATTGGGCCATGAAGAAGAACAAAATCTCTACTAAACAAATACCGAAACAAATTGTCCCTCAACAAAATACTAATGAAACTACTCATCAAATACAGAATAATAATAATGATGATGATGAAGTTGCAGTGGAAACTCTACTACTACCTATCCCATCACTAGAAAGAGAAGGTGATTTCATGGTCTTGGATCCTGACGTAGAAGGCCAGGTAGAGATAGCAGCAGAGTTATTCGGTGATGAATTAAGTTCCTATTATGATCGAAAAGGATCAGAGAGTAATTATTCTTCATTGAACTACGTTGTCGGAGACACGGAATTGTCTTTTCATGTGGAAGAGGTTAAAACAACACATGATGTTTTAGTTGACGGTGAGAAACAACTTAATTATGACATGTTAGGAGGACTACACTATCAACAAGTTGAAGAAAGCATTAATGGCGTTGGTGGGGCGTTGAGTTATGGTGACAAAGACATCATGGACAATTGTGTTGTGGAAGAGTGTGGAATTTCAAATAAAGACAATGGTGTAATTAGTGTGACGATGAACGGTGGTTATAGTGATGAACACGATGTGTGTCCTGATAAAATGTCATCAATTGAGGATTTAAATAGGAATGGTGTGAACCTTACTACAACTACCTTAAATGGTGAAAATGGGGAGTGGTTATATGATAATAACTTGGATTGGGAGAGCATCATGGCATTTACTAATCATGATGATAATGAATGTGATGCAAAGGAAACTAAAGAAGATTTGGTGAAATGGTTGTGTAAAGATGATGATGAATGGGAAAGTGAATGCAATAATTTGGGTGAGATAGATCTTCAGGAACAAAATGACATGGTTGCTTGGCTTCTCTCTTAA 1302 0.3833 MGRAPCCEKVGLKKGRWTEEEDDILRKYIKENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGNLKRGNISAEEEDIIVKLHASFGNRWSLIATQLRGRTDNEIKNYWNSHLSRKIYSFRRPTITTDMDPKPIVVIPPRRRGGRTSHWAMKKNKISTKQIPKQIVPQQNTNETTHQIQNNNNDDDEVAVETLLLPIPSLEREGDFMVLDPDVEGQVEIAAELFGDELSSYYDRKGSESNYSSLNYVVGDTELSFHVEEVKTTHDVLVDGEKQLNYDMLGGLHYQQVEESINGVGGALSYGDKDIMDNCVVEECGISNKDNGVISVTMNGGYSDEHDVCPDKMSSIEDLNRNGVNLTTTTLNGENGEWLYDNNLDWESIMAFTNHDDNECDAKETKEDLVKWLCKDDDEWESECNNLGEIDLQEQNDMVAWLLS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0518 433 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal13g0518 433 CDD SANT 16 61 IPR001005 -
Lal13g0518 433 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g0518 433 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal13g0518 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal13g0518 433 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 425 - -
Lal13g0518 433 SMART sant 66 114 IPR001005 -
Lal13g0518 433 SMART sant 13 63 IPR001005 -
Lal13g0518 433 CDD SANT 71 112 IPR001005 -
Lal13g0518 433 Gene3D - 11 67 - -
Lal13g0518 433 PANTHER MYB TRANSCRIPTION FACTOR 2 425 - -
Lal13g0518 433 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g0518 433 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal13g0518 433 Gene3D - 69 131 - -
Lal13g0518 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0518 Lal-Chr13 3341923 3344824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0518 1 151 MYB Transcription Factor Family AT2G47460 69.182 2.26e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0518 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0518 K09422 - gmx:100814275 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0518 13 3341923 3344824 Lal13g0518 13 3341923 3344824 ECH
Lal12g0520 12 3685842 3687842 Lal13g0518 13 3341923 3344824 LSH
Lal3g1365 3 19424510 19428701 Lal13g0518 13 3341923 3344824 PCT
Lal5g0241 5 2123963 2130500 Lal13g0518 13 3341923 3344824 PCT
Lal13g0518 13 3341923 3344824 Lal3g1365 3 19424510 19428701 PCT
Lal13g0518 13 3341923 3344824 Lal5g0241 5 2123963 2130500 PCT