Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0499 ATGCTACCACTTAATTTCTTCTTCTCAACTTCTACAATGAAGAACTTCAGAAAAATAGCACCCTTTCTTGCTCTTGTACTTTTTGTGCTATTCATTTTAGGAAATCACTTCACTAACACCCTTAAAGAACCAAGTCCTTCACAAAAACACCACATTCATTTTCAAAAACACATTCAAGTAGCTGAACCAATATGCCAAGGAACACTCTACCCAGACCTATGTGTATCAACCATTGCCACTTTTCCTAACCTTGCTTCCAAATCAGTCCCACAAATTATCTCCTCTGTGGTCAACCAAACAGTATATGAAGTGAAATCATCATCCTACAACTGCAGCAGCCTAAGAAAGAAACTAAAAAATTTGAAGCCACTTGAACAAAGAGCCCTTGATGACTGTCTCAAACTGTTTGATGACACCACTATAGAGCTCAAAACAGCCATTGCTGAACTCTCCAAAACCACAATAGGTTCCAAGCGTTACCATGATTTGCAAACTCTGCTAAGTGGAGCAATGACCAACTTGTACACATGCCTCGATGGTTTTGCTTACACCAAAGGAGGAAAGAATAAGGTGAGGAACAAAATTGAGAAGAAGTTGCTAAAGATATCACACCATGTGAGTAACTCTTTGGCCATGTTGAAGAAAGTGCCCGGAGTTAAGAAAAGTTCCAAGTCTGAAGTGTTCCCTGAATATGGTAAGATGAAAGAAGGGTTCCCTTCTTGGGTGAACTCAAAAGGCCGTAAGCTCCTGCAAGCTTCTGTGAAAGAGACCAAGTTTGATTTTGTTGTGGCCAAAGATGGCACTGGCAATTTCACCACTATAGGGGAAGCATTGGCTGCAGCTCCTAATTCCAGCATAACTAGGTTTGTGATACACATAAAGGCTGGGGCATACTTTGAGAATGTAGAAGTTAGCAGGAAGCAGACCAATCTGGTGTTTGTGGGAGATGGTATTGGAAAAACAGTAGTGAAGTCCAGTAGGAATGTTGTGGATGGCTGGACCACTTTTCAATCAGCTACTGTTGCTGTTGTGGGACAAGGTTTCATAGCTAAAGGTATAACCTTTGAGAATTCAGCTGGGCCAGACAAACACCAAGCAGTAGCACTAAGGAGTGGTGCTGATTTCTCAGTCTTCTACAAATGCAGTTTTATTGGCTACCAAGACACTCTCTATGTCCATTCCCTACGCCAATTCTATCGTGAATGTGACATTTATGGCACAGTTGATTTTATATTTGGCAATGCTGCTGTAGTGTTTCAAAATTGTAACTTATATGCACGCAAGCCAAATGAAAATCAACAGAATTTGTTCACTGCACAAGGTAGAGAGGATCCAAACCAAAACACTGGAATATCCATATTGAATTGCAAGATTGCAGCTGCTGCAGATTTAATCCCAGTCAAATCATCATTCAAGAACTACCTAGGGCGTCCTTGGAAATTGTATTCAAGGACTGTTTTTCTTAAATCTTACATGGAGGACTTGATTGAACCAGCAGGGTGGTTGGAATGGAATGAAACATTTGCATTGAATACATTGTATTATGGAGAGTACATGAATAAGGGTCCAGGTTCAAATATAAGAGGTAGAGTTACATGGCCAGGTTATAGAGTAATCAATAGCTCCATTGAAGCAAGCCAATTCACTGTGGGGCAGTTTATACAAGGGAATGATTGGTTGAACTCCACTGGTGTTCCATTCTTTACTAATTTGAATTGA 1719 0.4037 MLPLNFFFSTSTMKNFRKIAPFLALVLFVLFILGNHFTNTLKEPSPSQKHHIHFQKHIQVAEPICQGTLYPDLCVSTIATFPNLASKSVPQIISSVVNQTVYEVKSSSYNCSSLRKKLKNLKPLEQRALDDCLKLFDDTTIELKTAIAELSKTTIGSKRYHDLQTLLSGAMTNLYTCLDGFAYTKGGKNKVRNKIEKKLLKISHHVSNSLAMLKKVPGVKKSSKSEVFPEYGKMKEGFPSWVNSKGRKLLQASVKETKFDFVVAKDGTGNFTTIGEALAAAPNSSITRFVIHIKAGAYFENVEVSRKQTNLVFVGDGIGKTVVKSSRNVVDGWTTFQSATVAVVGQGFIAKGITFENSAGPDKHQAVALRSGADFSVFYKCSFIGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQQNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKNYLGRPWKLYSRTVFLKSYMEDLIEPAGWLEWNETFALNTLYYGEYMNKGPGSNIRGRVTWPGYRVINSSIEASQFTVGQFIQGNDWLNSTGVPFFTNLN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0499 572 PANTHER PECTINESTERASE 35 571 - -
Lal13g0499 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 216 IPR035513 -
Lal13g0499 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Lal13g0499 572 CDD PMEI-like_3 64 218 - -
Lal13g0499 572 SUPERFAMILY Pectin lyase-like 258 569 IPR011050 -
Lal13g0499 572 SMART PMEI_2 56 212 IPR006501 GO:0004857
Lal13g0499 572 Pfam Plant invertase/pectin methylesterase inhibitor 64 212 IPR006501 GO:0004857
Lal13g0499 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 215 IPR006501 GO:0004857
Lal13g0499 572 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lal13g0499 572 PANTHER PECTINESTERASE 35 571 - -
Lal13g0499 572 Pfam Pectinesterase 260 557 IPR000070 GO:0030599|GO:0042545
Lal13g0499 572 Gene3D - 254 571 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0499 Lal-Chr13 3222437 3227158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0499 85 571 Carbohydrate Esterase AT4G02320 56.313 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0499 K01051 - gmx:100802881 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0499 13 3222437 3227158 Lal13g0499 13 3222437 3227158 ECH
Lal3g1357 3 19350738 19352612 Lal13g0499 13 3222437 3227158 PCT
Lal13g0499 13 3222437 3227158 Lal5g0254 5 2230578 2235678 PCT