Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0498 ATGGCTTTCAAGCACTTCTCAGTTTATACATTCTTTGTTTCATATCTGCTTTGCATCTTTGTCTTGTCATCATTGTCCATTACAGATAACATTGAAACCATTTGTGGCTCAACTATAGACCCTAACTATTGCAAAAATGTGCTTGCTAATCAAAATGGCAATGTCTTTGATTATGGTCGCTTTTCTGTTCAAAAGTCCTTGACCCATTCTCTTAAGTTCTTAAACTTAGTGAACTCATACCTTCAAAATAGCTCAGTTTTCTCTCAATACACAATCCATGCTCTTGAAGATTGCCAGTTCCTTGCTGAGCAAAATAATGAATACTTATCAAACACATATAACATAATTAATCATGTTAGCAATGTTCTTCCTACCTCTCAAGCCGAAGATTTTCAAACCATTCTAAGTGCCGTTTTGACTAACCAAGAAACTTGTTTTGGTGGCCTACAAAGCACAAGTTCTGATCCAATAGTGAAGAATGACTTGTCTTCATCGCTTTCCAATGACACAAAACTACACAGTGTCTCACTTGCACTGTTTGTGAAGGGTTGGGTGCCAAGGAAGATAATCACAACATCATGGCAACACAATGGAGGAAATTTGGATTTTCATAATAGTCATTTACAATTAAAGATGTCAAATGGAGCACGTGCTATATATGATTCCGCTATGCATCATGGGAGAAAACTACTTCAAACGAAAAATGACAGTAGCGTTGTGATAATTGACATTGTAGTTGTAAGTCAGGATGGAAGTGGAAACTTCACCACTATCAACGATGCCATCGCTGCTGCTCCAAATAACACAAATTCTACTAGTGGATACTTCTTGATTTTTATCAAAGCGGGTGTATATCAGGAATATGTAACTGTAAATAAAACCAAGACGTATTTGATGCTAATTGGAGAAGGAATCAATCAAACAATTATCACCGGGAATCACAATGTGGGCGATGGTAATTTTACCACATTCAACTCTGCAACATTTGCTGTGGTTGCTCAAGGATTTGTAGCAGTTAATATAACATTCCGCAACACAGCAGGACCAAGCAAGTTCCAAGCAGTTGCACTACGAAGTGGAGCGGACATGTCCAGTTTCTATAGTTGCAGCTTCGAAGGGTATCAAGACACATTATATACACATTCTTTGAGGCAATTTTACCGAGAATGTGATATCTATGGCACAGTTGACTACATATTTGGAAATGCAGCTGTTGTTTTTCAAAACTGCAACATTTATTCTCGTCTCCCCCTGAATGGTCAATTCAATACTATCACAGCTCAAGGTAGAACAGACCCAAATCAAAACACAGGCACTTCCATACAGAATGGTACTATTAAAGCTGCTGATGATTTGGCTCCAAAAGTTGATACTGTACAAACATATCTTGGGAGGCCATGGAAGGAATATTCAAGGACTGTTTTTATGCAGTCATTTATGGATAGGTTGATAAATGCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCTTTGAGCACGTTGTATTATGGTGAGTATAATAATACAGGACCTGGCTCAAATACTACGAATCGTGTGACATGGTCTGGTTATCATATTATTAATGCTACTGATGCAGCCAACTTTACTGTCTCAAACTTCTTGGCTGGAGATAATTGGCTTCCACAAACTGGTATCCCATACTTGGGTGGATTTATATAG 1680 0.3815 MAFKHFSVYTFFVSYLLCIFVLSSLSITDNIETICGSTIDPNYCKNVLANQNGNVFDYGRFSVQKSLTHSLKFLNLVNSYLQNSSVFSQYTIHALEDCQFLAEQNNEYLSNTYNIINHVSNVLPTSQAEDFQTILSAVLTNQETCFGGLQSTSSDPIVKNDLSSSLSNDTKLHSVSLALFVKGWVPRKIITTSWQHNGGNLDFHNSHLQLKMSNGARAIYDSAMHHGRKLLQTKNDSSVVIIDIVVVSQDGSGNFTTINDAIAAAPNNTNSTSGYFLIFIKAGVYQEYVTVNKTKTYLMLIGEGINQTIITGNHNVGDGNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKFQAVALRSGADMSSFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDYIFGNAAVVFQNCNIYSRLPLNGQFNTITAQGRTDPNQNTGTSIQNGTIKAADDLAPKVDTVQTYLGRPWKEYSRTVFMQSFMDRLINAAGWHEWSGDFALSTLYYGEYNNTGPGSNTTNRVTWSGYHIINATDAANFTVSNFLAGDNWLPQTGIPYLGGFI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0498 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
Lal13g0498 559 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 18 555 - -
Lal13g0498 559 Pfam Plant invertase/pectin methylesterase inhibitor 30 179 IPR006501 GO:0004857
Lal13g0498 559 PANTHER PECTINESTERASE 18 555 - -
Lal13g0498 559 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Lal13g0498 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 180 IPR035513 -
Lal13g0498 559 Gene3D - 242 559 IPR012334 -
Lal13g0498 559 CDD PMEI-like_3 33 180 - -
Lal13g0498 559 ProSitePatterns Pectinesterase signature 1. 272 291 IPR018040 -
Lal13g0498 559 SMART PMEI_2 26 179 IPR006501 GO:0004857
Lal13g0498 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Lal13g0498 559 Pfam Pectinesterase 245 544 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0498 Lal-Chr13 3218032 3220540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0498 1 559 Carbohydrate Esterase AT4G02330 56.424 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0498 K01051 - gmx:100786124 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0498 13 3218032 3220540 Lal13g0498 13 3218032 3220540 ECH