LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g0497	ATGACAATAATGTCAACCATTCTCATTCTCCTTCTACCCTTATTTGTTACTCTAGCTTTAGGGGATACCCCTCCCACCACTACGGTATCTACTGGAACCGTATGCAAATCCACCCCTGACCCATCTTATTGCAAATCAGTGCTCCCAACTCAAAATGGTAATGTTTATGACTATGGTCGTATCTCGGTCAAAAAATCCTTATCACAAGCCACTAAATTCTTGAACTTAGTTAACAAATATCTCCAAAAAAGCTCAACTCTTTCCACTCCTGCAATTCGTGCACTCCAAGATTGTAAAACCCTTGCTGAGCTTAACCTTGATTTTCTTTCAAGTTCCTTCCAAACGGTTAACAAAACAACTAGGTTTCTTCAAAGTTCTCAAGCTGATGATATTCAAACATTGCTTAGTGCCATTTTAACAAATCAACAAACATGCTCAGATGGTCTTCAATCCACTTCTTCAGCTTGGAGCGTGAAAAATGGACTCTCTAGTCCAATTTCTAATGACACAAAACTCTTCAGTGTCTCTCTTGCTCTTTTTACAAAAGGGTGGGTTCCTAGCCACAAAAACAAACCCTCTACTTTTCATCCAACAAGAAAACAACTTGGATTTCAAAATGGGCGTTTGCCACTTAAGATGTCAAGTAGAACCCGTGCAATATACGAGTCAGTGAGTAATAGGAAACTTCTTCAGGCTACGGTGGAGGAAGATGTTATGGTGTCAGACATCGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTCACTACAATCAATGATGCTATTGCTGCTGCACCAAATAAGTCTTTGTCTACAGATGGGTACTTCTTGATCTATGTAACAGCTGGTGTTTATGAAGAGAATGTTTCTATTGATAAGAAGAAGACTTATTTGATGATGGTTGGAGATGGTATCAACCAAACAATCATAACAGGAAATCGTAGTGTTGTTGATGGATGGACAACTTTCAACTCAGCATCATTTGTTGTGGTTGGGCAAGGATTCGTGGGTGTAAACTTTACTGTTCGTAACACTGCTGGAGCAGTGAAACACCAAGCAGTAGCACTGAGAAATGGAGCAGATTTATCCACATTTTACAGTTGCAGCTTTGAGGGTTACCAAGACACACTATACACACATTCCCTAAGACAATTCTACAGGGAATGTGACATATACGGAACCGTAGATTTCATATTTGGAAATGCTGCAGTTGTGTTCCAAAACTGCAACCTATACCCACGCCTTCCAATGAGTGGACAATTCAATGCTATCACTGCACAAGGACGAACTGATCCAAACCAAAACACTGGCACTTCAATTCATAACTGCACCATAACAGCAGCTGATGATTTAGTTGGGAACATTGGTTCAGTTAAAACATATCTTGGAAGGCCTTGGAAAGAGTACTCAAGAACGGTTTATATGCAAAGTTTCATAGACAATGTGGTTGATGTTACTGGATGGAATAAATGGGATGGTGATTTTGCTTTAAGCACATTGTATTATGCAGAATTTAACAATAGTGGACCAGGGTCTAGCACTGATAACAGGGTGACATGGCCAGGATATCATGTGATTAATGCCACTGATGCTGTTAATTTCACTGTTACTAATTTTTTGCTTGGAGATAATTGGCTGCCCCAGACTGGAGTCACTTACACCAGTAATTTGGTATAG	1674	0.3984	MTIMSTILILLLPLFVTLALGDTPPTTTVSTGTVCKSTPDPSYCKSVLPTQNGNVYDYGRISVKKSLSQATKFLNLVNKYLQKSSTLSTPAIRALQDCKTLAELNLDFLSSSFQTVNKTTRFLQSSQADDIQTLLSAILTNQQTCSDGLQSTSSAWSVKNGLSSPISNDTKLFSVSLALFTKGWVPSHKNKPSTFHPTRKQLGFQNGRLPLKMSSRTRAIYESVSNRKLLQATVEEDVMVSDIVVVSQDGSGNFTTINDAIAAAPNKSLSTDGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINQTIITGNRSVVDGWTTFNSASFVVVGQGFVGVNFTVRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTITAADDLVGNIGSVKTYLGRPWKEYSRTVYMQSFIDNVVDVTGWNKWDGDFALSTLYYAEFNNSGPGSSTDNRVTWPGYHVINATDAVNFTVTNFLLGDNWLPQTGVTYTSNLV	557

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g0497	557	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	33	182	IPR035513	-
	Lal13g0497	557	ProSitePatterns	Pectinesterase signature 2.	390	399	IPR033131	-
	Lal13g0497	557	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	7	181	IPR006501	GO:0004857
	Lal13g0497	557	SMART	PMEI_2	26	179	IPR006501	GO:0004857
	Lal13g0497	557	CDD	PMEI-like_3	33	184	-	-
	Lal13g0497	557	Pfam	Pectinesterase	244	542	IPR000070	GO:0030599\|GO:0042545
	Lal13g0497	557	Pfam	Plant invertase/pectin methylesterase inhibitor	33	179	IPR006501	GO:0004857
	Lal13g0497	557	PANTHER	PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED	27	555	-	-
	Lal13g0497	557	Gene3D	Invertase/pectin methylesterase inhibitor family protein	32	182	IPR035513	-
	Lal13g0497	557	SUPERFAMILY	Pectin lyase-like	240	554	IPR011050	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g0497	Lal-Chr13	3207249	3209536	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal13g0497	4	557	Carbohydrate Esterase	AT4G02330	63.240	0.0	731

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g0497	K01051		-	gmx:100800971	906.746

Showing 1 to 1 of 1 entries