Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0497 ATGACAATAATGTCAACCATTCTCATTCTCCTTCTACCCTTATTTGTTACTCTAGCTTTAGGGGATACCCCTCCCACCACTACGGTATCTACTGGAACCGTATGCAAATCCACCCCTGACCCATCTTATTGCAAATCAGTGCTCCCAACTCAAAATGGTAATGTTTATGACTATGGTCGTATCTCGGTCAAAAAATCCTTATCACAAGCCACTAAATTCTTGAACTTAGTTAACAAATATCTCCAAAAAAGCTCAACTCTTTCCACTCCTGCAATTCGTGCACTCCAAGATTGTAAAACCCTTGCTGAGCTTAACCTTGATTTTCTTTCAAGTTCCTTCCAAACGGTTAACAAAACAACTAGGTTTCTTCAAAGTTCTCAAGCTGATGATATTCAAACATTGCTTAGTGCCATTTTAACAAATCAACAAACATGCTCAGATGGTCTTCAATCCACTTCTTCAGCTTGGAGCGTGAAAAATGGACTCTCTAGTCCAATTTCTAATGACACAAAACTCTTCAGTGTCTCTCTTGCTCTTTTTACAAAAGGGTGGGTTCCTAGCCACAAAAACAAACCCTCTACTTTTCATCCAACAAGAAAACAACTTGGATTTCAAAATGGGCGTTTGCCACTTAAGATGTCAAGTAGAACCCGTGCAATATACGAGTCAGTGAGTAATAGGAAACTTCTTCAGGCTACGGTGGAGGAAGATGTTATGGTGTCAGACATCGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTCACTACAATCAATGATGCTATTGCTGCTGCACCAAATAAGTCTTTGTCTACAGATGGGTACTTCTTGATCTATGTAACAGCTGGTGTTTATGAAGAGAATGTTTCTATTGATAAGAAGAAGACTTATTTGATGATGGTTGGAGATGGTATCAACCAAACAATCATAACAGGAAATCGTAGTGTTGTTGATGGATGGACAACTTTCAACTCAGCATCATTTGTTGTGGTTGGGCAAGGATTCGTGGGTGTAAACTTTACTGTTCGTAACACTGCTGGAGCAGTGAAACACCAAGCAGTAGCACTGAGAAATGGAGCAGATTTATCCACATTTTACAGTTGCAGCTTTGAGGGTTACCAAGACACACTATACACACATTCCCTAAGACAATTCTACAGGGAATGTGACATATACGGAACCGTAGATTTCATATTTGGAAATGCTGCAGTTGTGTTCCAAAACTGCAACCTATACCCACGCCTTCCAATGAGTGGACAATTCAATGCTATCACTGCACAAGGACGAACTGATCCAAACCAAAACACTGGCACTTCAATTCATAACTGCACCATAACAGCAGCTGATGATTTAGTTGGGAACATTGGTTCAGTTAAAACATATCTTGGAAGGCCTTGGAAAGAGTACTCAAGAACGGTTTATATGCAAAGTTTCATAGACAATGTGGTTGATGTTACTGGATGGAATAAATGGGATGGTGATTTTGCTTTAAGCACATTGTATTATGCAGAATTTAACAATAGTGGACCAGGGTCTAGCACTGATAACAGGGTGACATGGCCAGGATATCATGTGATTAATGCCACTGATGCTGTTAATTTCACTGTTACTAATTTTTTGCTTGGAGATAATTGGCTGCCCCAGACTGGAGTCACTTACACCAGTAATTTGGTATAG 1674 0.3984 MTIMSTILILLLPLFVTLALGDTPPTTTVSTGTVCKSTPDPSYCKSVLPTQNGNVYDYGRISVKKSLSQATKFLNLVNKYLQKSSTLSTPAIRALQDCKTLAELNLDFLSSSFQTVNKTTRFLQSSQADDIQTLLSAILTNQQTCSDGLQSTSSAWSVKNGLSSPISNDTKLFSVSLALFTKGWVPSHKNKPSTFHPTRKQLGFQNGRLPLKMSSRTRAIYESVSNRKLLQATVEEDVMVSDIVVVSQDGSGNFTTINDAIAAAPNKSLSTDGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINQTIITGNRSVVDGWTTFNSASFVVVGQGFVGVNFTVRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTITAADDLVGNIGSVKTYLGRPWKEYSRTVYMQSFIDNVVDVTGWNKWDGDFALSTLYYAEFNNSGPGSSTDNRVTWPGYHVINATDAVNFTVTNFLLGDNWLPQTGVTYTSNLV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0497 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 182 IPR035513 -
Lal13g0497 557 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Lal13g0497 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 181 IPR006501 GO:0004857
Lal13g0497 557 SMART PMEI_2 26 179 IPR006501 GO:0004857
Lal13g0497 557 CDD PMEI-like_3 33 184 - -
Lal13g0497 557 Pfam Pectinesterase 244 542 IPR000070 GO:0030599|GO:0042545
Lal13g0497 557 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Lal13g0497 557 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 27 555 - -
Lal13g0497 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 182 IPR035513 -
Lal13g0497 557 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
Lal13g0497 557 Gene3D - 238 556 IPR012334 -
Lal13g0497 557 PANTHER PECTINESTERASE 27 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0497 Lal-Chr13 3207249 3209536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0497 4 557 Carbohydrate Esterase AT4G02330 63.240 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0497 K01051 - gmx:100800971 906.746