Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0488 ATGTCTCGTGTAGCAGTGAAGGGGAAGAAGAAGGGAGCGACCTTCGTCATAGAATGCGCCAAGCCTGTGGAGGATAAGATTATGGATATCGCTTCTCTCGAGAAGTTTCTTCAGGAGAGGATCAAAGTTGGTGGCAAAGCTGGCGCACTCGGCGATTCCGTCACAGTCACTCGTGACAAGACCAAGATCACCGTCACTTCCGATTCCAATTTCTCCAAACGCTATCTGAAATACTTGACAAAGAAGTACTTGAAGAAGCACAATGTTAGGGATTGGCTTCGTGTGATTGCCTCCAACAAGGACAGGAATGTCTATGAGTTGAGATACTTCAACATTGCAGAGAATGAGGCTGAAGAGGAAGACTAA 366 0.4645 MSRVAVKGKKKGATFVIECAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEAEEED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0488 121 PANTHER 60S RIBOSOMAL PROTEIN L22-2 4 121 - -
Lal13g0488 121 Gene3D - 2 121 IPR038526 -
Lal13g0488 121 Pfam Ribosomal L22e protein family 11 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lal13g0488 121 PANTHER 60S RIBOSOMAL PROTEIN L22 4 121 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0488 Lal-Chr13 3162009 3163914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0488 1 121 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 82.258 2.36e-62 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0488 K02891 - cit:102631252 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0488 13 3162009 3163914 Lal13g0488 13 3162009 3163914 ECH
Lal12g0493 12 3525372 3526754 Lal13g0488 13 3162009 3163914 ECH