Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0481 ATGTACCATGCTGTAAAATTCAGCAATGTGCTGCTGTGCATTATTATTTATTTTGGTGATGGCACATTGAGAGTCATGAGTAGAATGACAAGAGGGAGTGATTCTCGAAAAATGTCCAAGGGTCGCCGGTCATCATTACCAGTTGAAGAAGCCGGTGAAGATCGTGAAGGTCCTTTAAAGAAAGGCCCGTGGACATCAGCAGAGGATGCGATTTTGTTAGAATATGTCAAAAAGCACGGAGAGGGAAATTGGAATGCTGTCCAAAAGCATTCAGGACTTTCCCGTTGTGGGAAAAGCTGTCGTCTACGTTGGGCAAATCATTTGAGACCTGATTTGAGAAAGGGTGCATTTACTCTAGAGGAAGAGCAACGAATCATTGAACTCCATGCTAGAATAGGAAACAAATGGGCTCAAATGGCTACTGAGTTGCCAGGACGCACAGACAATGAAATAAAGAACTATTGGAACACAAGATCTAAGAGAATGCGACGAGTTGGCTTACCACTTTATCCTGCTGACATATGCCTAAGAGTGTTGAACAACAATCAAGAGAGTCTAGATGCCGACACCTTGCCAAGTGGATCTGGACAGCATGATGATGTCTCACAGACAGATGATTTGGATATACCAGATCTTGAATTCAAAAATTACAAAATTCACGGTGCTCTATCTTTTGAACCACCAGTTTTTGATATACCTGAAAGCAACATGTTTCGGAAAACTTCAGACTCATCCTATACTTATAATGCCATGTCCACAACACATCCTACAATGCGCCTTCGGGAGTCAGATGTGTTATACAATAATAGTCTTGATAGTCACATCAGCAGTCCTGTCCCATTATTTGATCAGTATGACAATTACACTTGTGAGAAAATTTCTGACCGCCCTAGATTTCCTTCTCCATATGATCTCATTATTGACACCGGTCAGTTTCATGGTTATGACTTTGCTGGCAGCCATGCCGCTTTAAATGGCAATACTTCTTCTTCCGTGCCCATAACTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTCAGAAAACCAACAAGGTTGTTGGGGCTTGCCTGCATCTCCACTTCCTTCACTTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAACTGATCCTGTTTCTCCAGGAAACAGTGGTTTGTTGGAAGCAATAATCTGGGAAGCAAATAATTTGAAGAGGTCAAACAATAATTCATCGAAACAGACATCTCAAAATCGCGTCCTCAATGAAGCAGTCAAGAGTTCAACCTTGAATCCCTGTACGACAGAATGTGATGAACAAGGGGATGATCTAAATTCCCCCTTAGGCCAGTCTTCTGCTTCAGTTCTGACTGACTATACTCCTATTAGCTTCTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGACAATAACCATGAATCAGCCGCACAGATCCCAGCTTACTGTTACAGGATGGAAAATTTGAGTAGGATAGACCTTACAGGGCCTGATGATATATTTGAGTTTGATTTGTTTTGCAATAGCATTGAGTCTAGCAATGATCAATCTGTTCTAAAAGATGCCTTAGATGCCTTTCTAGGTGAAGATTTTTACGGTTAG 1614 0.4207 MYHAVKFSNVLLCIIIYFGDGTLRVMSRMTRGSDSRKMSKGRRSSLPVEEAGEDREGPLKKGPWTSAEDAILLEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLRKGAFTLEEEQRIIELHARIGNKWAQMATELPGRTDNEIKNYWNTRSKRMRRVGLPLYPADICLRVLNNNQESLDADTLPSGSGQHDDVSQTDDLDIPDLEFKNYKIHGALSFEPPVFDIPESNMFRKTSDSSYTYNAMSTTHPTMRLRESDVLYNNSLDSHISSPVPLFDQYDNYTCEKISDRPRFPSPYDLIIDTGQFHGYDFAGSHAALNGNTSSSVPITGAMKLELPSLQYSENQQGCWGLPASPLPSLESVDTLIQSPPTDPVSPGNSGLLEAIIWEANNLKRSNNNSSKQTSQNRVLNEAVKSSTLNPCTTECDEQGDDLNSPLGQSSASVLTDYTPISFCSVDGPQSIETTQDHDNNHESAAQIPAYCYRMENLSRIDLTGPDDIFEFDLFCNSIESSNDQSVLKDALDAFLGEDFYG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0481 537 Gene3D - 116 162 - -
Lal13g0481 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 112 IPR017930 -
Lal13g0481 537 CDD SANT 63 108 IPR001005 -
Lal13g0481 537 MobiDBLite consensus disorder prediction 187 206 - -
Lal13g0481 537 CDD SANT 116 157 IPR001005 -
Lal13g0481 537 MobiDBLite consensus disorder prediction 30 61 - -
Lal13g0481 537 Gene3D - 60 113 - -
Lal13g0481 537 Pfam Myb-like DNA-binding domain 61 108 IPR001005 -
Lal13g0481 537 Pfam Myb-like DNA-binding domain 114 157 IPR001005 -
Lal13g0481 537 SUPERFAMILY Homeodomain-like 59 155 IPR009057 -
Lal13g0481 537 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 26 535 - -
Lal13g0481 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 163 IPR017930 -
Lal13g0481 537 ProSiteProfiles Myb-like domain profile. 56 108 IPR001005 -
Lal13g0481 537 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 535 - -
Lal13g0481 537 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Lal13g0481 537 SMART sant 60 110 IPR001005 -
Lal13g0481 537 SMART sant 113 161 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0481 Lal-Chr13 3111894 3115552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0481 59 535 MYB Transcription Factor Family AT5G06100 37.325 1.97e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0481 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0481 K09422 - gmx:100818609 590.882